Mercurial > repos > peterjc > get_orfs_or_cdss
changeset 20:036e4151b27a draft
planemo upload for repository https://github.com/peterjc/pico_galaxy/tree/master/tools/get_orfs_or_cdss commit 6d77d2fbb0d3ea1fd4db369073654b8a920c44bf-dirty
| author | peterjc |
|---|---|
| date | Fri, 21 Apr 2017 12:02:44 -0400 |
| parents | 4842509a4179 |
| children | 128f5379d89c |
| files | tools/get_orfs_or_cdss/README.rst tools/get_orfs_or_cdss/get_orfs_or_cdss.xml tools/get_orfs_or_cdss/tool_dependencies.xml |
| diffstat | 3 files changed, 6 insertions(+), 6 deletions(-) [+] |
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--- a/tools/get_orfs_or_cdss/README.rst Thu Feb 09 11:23:34 2017 -0500 +++ b/tools/get_orfs_or_cdss/README.rst Fri Apr 21 12:02:44 2017 -0400 @@ -1,7 +1,7 @@ Galaxy tool to find ORFs or simple CDSs ======================================= -This tool is copyright 2011-2015 by Peter Cock, The James Hutton Institute +This tool is copyright 2011-2017 by Peter Cock, The James Hutton Institute (formerly SCRI, Scottish Crop Research Institute), UK. All rights reserved. Additions copyright 2015-2016 by Eric Rasche. See the licence text below (MIT licence). @@ -77,6 +77,7 @@ - Added NCBI genetic code table 24, Pterobranchia Mitochondrial. v0.1.1 - Reorder XML elements (internal change only). v0.2.0 - Tool now also outputs GFF3 formatted calls (Eric Rasche). +v0.2.1 - Depends on Biopython 1.67 via legacy Tool Shed package or bioconda ======= ======================================================================
--- a/tools/get_orfs_or_cdss/get_orfs_or_cdss.xml Thu Feb 09 11:23:34 2017 -0500 +++ b/tools/get_orfs_or_cdss/get_orfs_or_cdss.xml Fri Apr 21 12:02:44 2017 -0400 @@ -1,8 +1,7 @@ -<tool id="get_orfs_or_cdss" name="Get open reading frames (ORFs) or coding sequences (CDSs)" version="0.2.0"> +<tool id="get_orfs_or_cdss" name="Get open reading frames (ORFs) or coding sequences (CDSs)" version="0.2.1"> <description>e.g. to get peptides from ESTs</description> <requirements> - <requirement type="package" version="1.65">biopython</requirement> - <requirement type="python-module">Bio</requirement> + <requirement type="package" version="1.67">biopython</requirement> </requirements> <stdio> <!-- Anything other than zero is an error -->
--- a/tools/get_orfs_or_cdss/tool_dependencies.xml Thu Feb 09 11:23:34 2017 -0500 +++ b/tools/get_orfs_or_cdss/tool_dependencies.xml Fri Apr 21 12:02:44 2017 -0400 @@ -1,6 +1,6 @@ <?xml version="1.0"?> <tool_dependency> - <package name="biopython" version="1.65"> - <repository changeset_revision="b3a791f6e3ba" name="package_biopython_1_65" owner="biopython" toolshed="https://testtoolshed.g2.bx.psu.edu" /> + <package name="biopython" version="1.67"> + <repository changeset_revision="fc45a61abc2f" name="package_biopython_1_67" owner="biopython" toolshed="https://testtoolshed.g2.bx.psu.edu" /> </package> </tool_dependency>