# HG changeset patch
# User peterjc
# Date 1492790564 14400
# Node ID 036e4151b27aaddebe8b8784d4ac31e93cc6f933
# Parent  4842509a41794e9c0dc6dbe410f1cd85c32ae3a1
planemo upload for repository https://github.com/peterjc/pico_galaxy/tree/master/tools/get_orfs_or_cdss commit 6d77d2fbb0d3ea1fd4db369073654b8a920c44bf-dirty

diff -r 4842509a4179 -r 036e4151b27a tools/get_orfs_or_cdss/README.rst
--- a/tools/get_orfs_or_cdss/README.rst	Thu Feb 09 11:23:34 2017 -0500
+++ b/tools/get_orfs_or_cdss/README.rst	Fri Apr 21 12:02:44 2017 -0400
@@ -1,7 +1,7 @@
 Galaxy tool to find ORFs or simple CDSs
 =======================================
 
-This tool is copyright 2011-2015 by Peter Cock, The James Hutton Institute
+This tool is copyright 2011-2017 by Peter Cock, The James Hutton Institute
 (formerly SCRI, Scottish Crop Research Institute), UK. All rights reserved.
 Additions copyright 2015-2016 by Eric Rasche.
 See the licence text below (MIT licence).
@@ -77,6 +77,7 @@
         - Added NCBI genetic code table 24, Pterobranchia Mitochondrial.
 v0.1.1  - Reorder XML elements (internal change only).
 v0.2.0  - Tool now also outputs GFF3 formatted calls (Eric Rasche).
+v0.2.1  - Depends on Biopython 1.67 via legacy Tool Shed package or bioconda
 ======= ======================================================================
 
 
diff -r 4842509a4179 -r 036e4151b27a tools/get_orfs_or_cdss/get_orfs_or_cdss.xml
--- a/tools/get_orfs_or_cdss/get_orfs_or_cdss.xml	Thu Feb 09 11:23:34 2017 -0500
+++ b/tools/get_orfs_or_cdss/get_orfs_or_cdss.xml	Fri Apr 21 12:02:44 2017 -0400
@@ -1,8 +1,7 @@
-<tool id="get_orfs_or_cdss" name="Get open reading frames (ORFs) or coding sequences (CDSs)" version="0.2.0">
+<tool id="get_orfs_or_cdss" name="Get open reading frames (ORFs) or coding sequences (CDSs)" version="0.2.1">
     <description>e.g. to get peptides from ESTs</description>
     <requirements>
-        <requirement type="package" version="1.65">biopython</requirement>
-        <requirement type="python-module">Bio</requirement>
+        <requirement type="package" version="1.67">biopython</requirement>
     </requirements>
     <stdio>
         <!-- Anything other than zero is an error -->
diff -r 4842509a4179 -r 036e4151b27a tools/get_orfs_or_cdss/tool_dependencies.xml
--- a/tools/get_orfs_or_cdss/tool_dependencies.xml	Thu Feb 09 11:23:34 2017 -0500
+++ b/tools/get_orfs_or_cdss/tool_dependencies.xml	Fri Apr 21 12:02:44 2017 -0400
@@ -1,6 +1,6 @@
 <?xml version="1.0"?>
 <tool_dependency>
-    <package name="biopython" version="1.65">
-        <repository changeset_revision="b3a791f6e3ba" name="package_biopython_1_65" owner="biopython" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+    <package name="biopython" version="1.67">
+        <repository changeset_revision="fc45a61abc2f" name="package_biopython_1_67" owner="biopython" toolshed="https://testtoolshed.g2.bx.psu.edu" />
     </package>
 </tool_dependency>