Mercurial > repos > peterjc > clinod
changeset 20:0645ce739dbb draft
Tweak install recipe
| author | peterjc |
|---|---|
| date | Tue, 13 Oct 2015 11:48:00 -0400 |
| parents | 72350dbda97d |
| children | 6a228bdaed13 |
| files | tools/clinod/tool_dependencies.xml |
| diffstat | 1 files changed, 7 insertions(+), 9 deletions(-) [+] |
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--- a/tools/clinod/tool_dependencies.xml Tue Sep 01 06:53:37 2015 -0400 +++ b/tools/clinod/tool_dependencies.xml Tue Oct 13 11:48:00 2015 -0400 @@ -3,19 +3,17 @@ <package name="clinod" version="1.3"> <install version="1.0"> <actions> - <!-- Set environment variable $CLINOD so wrapper knows where to look --> - <action type="set_environment"> - <environment_variable name="CLINOD" action="set_to">$INSTALL_DIR</environment_variable> - </action> + <!-- Main JAR file --> + <action type="download_file">http://www.compbio.dundee.ac.uk/nod/downloads/clinod-1.3.jar</action> + <action type="move_file"><source>clinod-1.3.jar</source><destination>$INSTALL_DIR/</destination></action> <!-- clinod requires the SNNS Batch Interpreter v1.0 executable --> <action type="shell_command">wget http://www.ra.cs.uni-tuebingen.de/downloads/SNNS/SNNSv4.3.tar.gz</action> <action type="shell_command">tar -zxvf SNNSv4.3.tar.gz</action> <action type="move_file"><source>SNNSv4.3/tools/bin/x86_64-pc-unknown-linux-gnuoldld/batchman</source><destination>$INSTALL_DIR/</destination></action> - <!-- clinod itself is just a JAR file --> - <action type="shell_command">wget http://www.compbio.dundee.ac.uk/nod/downloads/clinod-1.3.jar</action> - <!-- Don't need to move it, $INSTALL_DIR is the current directory - <action type="move_file"><source>clinod-1.3.jar</source><destination>$INSTALL_DIR</destination></action> - --> + <!-- Set environment variable $CLINOD so wrapper knows where to look --> + <action type="set_environment"> + <environment_variable name="CLINOD" action="set_to">$INSTALL_DIR/</environment_variable> + </action> </actions> </install> <readme>