Mercurial > repos > peterjc > blastxml_to_top_descr

changeset 17:ccf0a59e8537 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/peterjc/galaxy_blast/tree/master/tools/blastxml_to_top_descr commit 39737c01a51469d0cf9920273de6c151ba84048d-dirty
author peterjc
date Thu, 18 May 2017 07:40:03 -0400
parents 6ade4e7c63b3
children 5737e2e7179a
files tools/blastxml_to_top_descr/README.rst tools/blastxml_to_top_descr/blastxml_to_top_descr.xml
diffstat 2 files changed, 11 insertions(+), 11 deletions(-) [+]
line wrap: on
line diff
--- a/tools/blastxml_to_top_descr/README.rst	Thu Feb 09 11:22:39 2017 -0500
+++ b/tools/blastxml_to_top_descr/README.rst	Thu May 18 07:40:03 2017 -0400
@@ -1,5 +1,5 @@
 OBGalaxy tool to extract top BLAST hit descriptions from BLAST XML
-================================================================
+==================================================================
 
 This tool is copyright 2012-2015 by Peter Cock, The James Hutton Institute
 (formerly SCRI, Scottish Crop Research Institute), UK. All rights reserved.
--- a/tools/blastxml_to_top_descr/blastxml_to_top_descr.xml	Thu Feb 09 11:22:39 2017 -0500
+++ b/tools/blastxml_to_top_descr/blastxml_to_top_descr.xml	Thu May 18 07:40:03 2017 -0400
@@ -21,7 +21,7 @@
     <inputs>
         <conditional name="input">
             <param name="in_format" type="select" label="Input format">
-                <option value="blastxml" select="True">BLAST XML</option>
+                <option value="blastxml" selected="true">BLAST XML</option>
                 <option value="tabular">Tabular</option>
             </param>
             <when value="blastxml">
@@ -30,17 +30,17 @@
             <when value="tabular">
                 <param name="in_file" type="data" format="tabular" label="BLAST results as tabular"/>
                 <param name="qseqid" type="data_column" data_ref="in_file"
-		       multiple="False" numerical="False" default_value="1" value="1"
-		       label="Column containing query ID (qseqid)"
-		       help="This is column 1 in standard BLAST tabular output" />
-		<param name="sseqid" type="data_column" data_ref="in_file"
-		       multiple="False" numerical="False" default_value="2" value="2"
-		       label="Column containing match ID (sseqid)"
-		       help="This is column 2 in standard BLAST tabular output"/>
+                       multiple="false" numerical="false" default_value="1" value="1"
+                       label="Column containing query ID (qseqid)"
+                       help="This is column 1 in standard BLAST tabular output" />
+                <param name="sseqid" type="data_column" data_ref="in_file"
+                       multiple="false" numerical="false" default_value="2" value="2"
+                       label="Column containing match ID (sseqid)"
+                       help="This is column 2 in standard BLAST tabular output"/>
                 <param name="salltitles" type="data_column" data_ref="in_file"
-		       multiple="False" numerical="False" default_value="25" value="25"
+                       multiple="false" numerical="false" default_value="25" value="25"
                        label="Column containing containing descriptions (salltitles)"
-		       help="This is column 25 in the default extended BLAST tabular output"/>
+                       help="This is column 25 in the default extended BLAST tabular output"/>
             </when>
         </conditional>
         <param name="topN" type="integer" min="1" max="100" optional="false" label="Number of descriptions" value="3"/>