Mercurial > repos > peterjc > blast_rbh

changeset 32:b662383a4bdc draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/peterjc/galaxy_blast/tree/master/tools/blast_rbh commit 39737c01a51469d0cf9920273de6c151ba84048d-dirty
author peterjc
date Thu, 18 May 2017 07:39:37 -0400
parents a5106b6c07a8
children 692366540172
files tools/blast_rbh/blast_rbh.xml
diffstat 1 files changed, 12 insertions(+), 12 deletions(-) [+]
line wrap: on
line diff
--- a/tools/blast_rbh/blast_rbh.xml	Wed Apr 26 06:46:12 2017 -0400
+++ b/tools/blast_rbh/blast_rbh.xml	Thu May 18 07:39:37 2017 -0400
@@ -28,11 +28,11 @@
     <inputs>
         <!-- Galaxy does not have sub-types for protein vs nucletide FASTA -->
         <param name="fasta_a" type="data" format="fasta"
-	       label="Genes/proteins from species A"
-	       help="FASTA file, one sequence per gene/protein." /> 
+               label="Genes/proteins from species A"
+               help="FASTA file, one sequence per gene/protein."/>
         <param name="fasta_b" type="data" format="fasta"
-	       label="Genes/proteins from species B"
-	       help="FASTA file, one sequence per gene/protein." /> 
+               label="Genes/proteins from species B"
+               help="FASTA file, one sequence per gene/protein."/>
         <conditional name="seq">
             <param name="dbtype" type="select" label="Molecule type of FASTA inputs">
                 <option value="prot">protein</option>
@@ -55,14 +55,14 @@
                 </param>
             </when>
         </conditional>
-	<param name="identity" type="float" value="70" min="0" max="100"
-	       label="Minimum percentage identity for BLAST matches"
-	       help="Default is 70%, use 0 for no filtering." />
+        <param name="identity" type="float" value="70" min="0" max="100"
+               label="Minimum percentage identity for BLAST matches"
+               help="Default is 70%, use 0 for no filtering." />
         <param name="q_cover" type="float" value="50" min="0" max="100"
-	       label="Minimum percentage query coverage for BLAST matches"
-	       help="Default is 50%, use 0 for no filtering." />
+               label="Minimum percentage query coverage for BLAST matches"
+               help="Default is 50%, use 0 for no filtering." />
         <param name="make_nr" type="boolean" checked="false" truevalue="--nr" falsevalue=""
-	       label="Process input FASTA files to collapse identical sequences"
+               label="Process input FASTA files to collapse identical sequences"
                help="i.e. First make the input non-redundant" />
     </inputs>
     <outputs>
@@ -106,7 +106,7 @@
             <param name="q_cover" value="86"/>
             <output name="output" file="rbh_none.tabular" ftype="tabular"/>
         </test>
-	<!-- push the coverage over the 86% level -->
+        <!-- push the coverage over the 86% level -->
         <test>
             <param name="fasta_a" value="rhodopsin_nucs.fasta" ftype="fasta"/>
             <param name="fasta_b" value="three_human_mRNA.fasta" ftype="fasta"/>
@@ -134,7 +134,7 @@
             <param name="q_cover" value="0.0"/>
             <output name="output" file="rbh_blastn_three_human_mRNA_vs_rhodopsin_nucs.tabular" ftype="tabular"/>
         </test>
-        <!-- this pair of examples test tied best hits -->	
+        <!-- this pair of examples test tied best hits -->
         <test>
             <param name="fasta_a" value="k12_ten_proteins.fasta" ftype="fasta"/>
             <param name="fasta_b" value="k12_edited_proteins.fasta" ftype="fasta"/>