Mercurial > repos > peterjc > blast2go
changeset 3:7602de1e7f32 draft
Uploaded v0.0.5, quotes filenames in case they contain spaces.
| author | peterjc |
|---|---|
| date | Fri, 22 Feb 2013 09:14:27 -0500 |
| parents | 5cb24d07c316 |
| children | d2b527ddb42d |
| files | tools/ncbi_blast_plus/blast2go.txt tools/ncbi_blast_plus/blast2go.xml |
| diffstat | 2 files changed, 3 insertions(+), 2 deletions(-) [+] |
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--- a/tools/ncbi_blast_plus/blast2go.txt Fri Feb 22 09:13:27 2013 -0500 +++ b/tools/ncbi_blast_plus/blast2go.txt Fri Feb 22 09:14:27 2013 -0500 @@ -94,6 +94,7 @@ v0.0.3 - Include sample loc file, tool-data/blast2go.loc.sample v0.0.4 - Include repository_dependencies.xml file for 'blastxml' format (previously included in the core Galaxy installation) +v0.0.5 - Quote arguments in case of spaces in filenames (internal change) Developers
--- a/tools/ncbi_blast_plus/blast2go.xml Fri Feb 22 09:13:27 2013 -0500 +++ b/tools/ncbi_blast_plus/blast2go.xml Fri Feb 22 09:14:27 2013 -0500 @@ -1,7 +1,7 @@ -<tool id="blast2go" name="Blast2GO" version="0.0.3"> +<tool id="blast2go" name="Blast2GO" version="0.0.5"> <description>Maps BLAST results to GO annotation terms</description> <command interpreter="python"> - blast2go.py $xml ${prop.fields.path} $tab + blast2go.py "${xml}" "${prop.fields.path}" "${tab}" </command> <inputs> <param name="xml" type="data" format="blastxml" label="BLAST XML results" description="You must have run BLAST against a protein database such as the NCBI non-redundant (NR) database. Use BLASTX for nucleotide queries, BLASTP for protein queries." />