Mercurial > repos > peterjc > align_back_trans
changeset 18:547f9bc6b2f2 draft
planemo upload for repository https://github.com/peterjc/pico_galaxy/tree/master/tools/align_back_trans commit 7496128ee9ef800fe780e545d2157da8a4f89d35-dirty
| author | peterjc |
|---|---|
| date | Thu, 11 May 2017 10:04:17 -0400 |
| parents | a56c63462736 |
| children | 80e38b710ae9 |
| files | tools/align_back_trans/align_back_trans.py tools/align_back_trans/align_back_trans.xml |
| diffstat | 2 files changed, 2 insertions(+), 1 deletions(-) [+] |
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--- a/tools/align_back_trans/align_back_trans.py Thu May 11 06:12:15 2017 -0400 +++ b/tools/align_back_trans/align_back_trans.py Thu May 11 10:04:17 2017 -0400 @@ -88,6 +88,7 @@ def sequence_back_translate(aligned_protein_record, unaligned_nucleotide_record, gap, table=0): + """Back-translate a sequence.""" # TODO - Separate arguments for protein gap and nucleotide gap? if not gap or len(gap) != 1: raise ValueError("Please supply a single gap character")
--- a/tools/align_back_trans/align_back_trans.xml Thu May 11 06:12:15 2017 -0400 +++ b/tools/align_back_trans/align_back_trans.xml Thu May 11 10:04:17 2017 -0400 @@ -5,7 +5,7 @@ </requirements> <version_command> python $__tool_directory__/align_back_trans.py --version -</version_command> + </version_command> <command detect_errors="aggressive"> python $__tool_directory__/align_back_trans.py $prot_align.ext '$prot_align' '$nuc_file' '$out_nuc_align' '$table' </command>