Mercurial > repos > peterjc > align_back_trans
changeset 14:50a40a3db275 draft
v0.0.8 Using Biopython 1.67 from Tool Shed or Conda package
| author | peterjc |
|---|---|
| date | Wed, 10 May 2017 12:04:33 -0400 |
| parents | e5834d670ed8 |
| children | e67ca0e3aa66 |
| files | tools/align_back_trans/README.rst |
| diffstat | 1 files changed, 9 insertions(+), 7 deletions(-) [+] |
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--- a/tools/align_back_trans/README.rst Wed May 10 11:48:59 2017 -0400 +++ b/tools/align_back_trans/README.rst Wed May 10 12:04:33 2017 -0400 @@ -72,11 +72,13 @@ v0.0.7 - Minor Python code style improvements (internal change only). v0.0.8 - Python coding style change to avoid lamba (internal change only). - Depends on Biopython 1.67 via legacy Tool Shed package or bioconda. - - Added recent NCBI genetic code tables: - * Table 24. *Pterobranchia Mitochondrial Code* - * Table 25. *Candidate Division SR1 and Gracilibacteria* + - Added two recent NCBI genetic code tables, + + - Table 24, *Pterobranchia* Mitochondrial Code, + - Table 25, Candidate Division SR1 and *Gracilibacteria*. + - Use ``<command detect_errors="aggressive">`` (internal change only). - - Single quote command line arguments (internal change only) + - Single quote command line arguments (internal change only). ======= ====================================================================== @@ -93,17 +95,17 @@ Planemo commands (which requires you have set your Tool Shed access details in ``~/.planemo.yml`` and that you have access rights on the Tool Shed):: - $ planemo shed_update -t testtoolshed --check_diff ~/repositories/pico_galaxy/tools/align_back_trans/ + $ planemo shed_update -t testtoolshed --check_diff tools/align_back_trans/ ... or:: - $ planemo shed_update -t toolshed --check_diff ~/repositories/pico_galaxy/tools/align_back_trans/ + $ planemo shed_update -t toolshed --check_diff tools/align_back_trans/ ... To just build and check the tar ball, use:: - $ planemo shed_upload --tar_only ~/repositories/pico_galaxy/tools/align_back_trans/ + $ planemo shed_upload --tar_only tools/align_back_trans/ ... $ tar -tzf shed_upload.tar.gz test-data/demo_nucs.fasta