Mercurial > repos > peter-waltman > ucsc_cluster_tools2

<tool id="cluster_tab_2_rdata" name="Convert tab-delimitted Cluster Assignments to RData" force_history_refresh="True">
    <command interpreter="python">cluster.tab.2.rdata.py
-d $dataset
-o ${output}

</command>
    <inputs>
    	<param name="dataset" type="data" label="Tab-delimited List of Cluster Assignments"/>
    </inputs>
    <outputs>
        <data format="rdata" name="output" label="Cluster RData File"/>
    </outputs>
<help>
.. class:: infomark

**Convert tab-delimitted cluster assignments to RData file** - Tool to convert a cluster assignment in tab-delimited format into an RData file format that can be read by the other tools in the Cluster-Tools Suite, e.g. The Kaplan-Meier Survival Plotting Tools

**OUTPUT:**  A new RData file, with the cluster assignments stored as a named numeric vector

----

**Parameters**

- **Cluster Assignment Matrix in tab-delimited format** Tab-delimited file AND MUST have a header line!

</help>
</tool>
author	peter-waltman
date	Mon, 11 Mar 2013 17:30:48 -0400
parents	a58527c632b7
children