Mercurial > repos > peter-waltman > ucsc_cluster_tools2
diff cluster.tools/rnaseq.feature.selection.xml @ 8:a58527c632b7 draft
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| author | peter-waltman |
|---|---|
| date | Mon, 11 Mar 2013 16:31:29 -0400 |
| parents | 563832f48c08 |
| children |
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--- a/cluster.tools/rnaseq.feature.selection.xml Mon Mar 04 04:11:28 2013 -0500 +++ b/cluster.tools/rnaseq.feature.selection.xml Mon Mar 11 16:31:29 2013 -0400 @@ -35,18 +35,17 @@ **Parameters** - **Z-transform data?** - Specify whether or not to Z-transform the rows (mean=0, sd=1) -- **Variance Metric for Genes** - Specify Metric to use for calculating Gene Variance. Choice of: +- **Variance Metric for Genes** - Specify Metric to use for calculating Gene Variance. Choice of * Median Absolute Deviation (MAD) * Maximum Absolute Deviation - similar to MAD, but uses the _Maximum_, instead of the Median Absolute Deviatioin * Standard Deviation - - **Percentage of Samples Passing** Percent of samples with an IPL that passes the threshold. Choice of: + + - **Percentage of Samples Passing** Percent of samples with an IPL that passes the threshold. Choice of * Integer Value - indicate the exact number of genes that are to be kept * Real Value in [0,1] - indicate the percentage of genes that are to be kept - - </help> </tool>