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comparison cluster.tools/rnaseq.feature.selection.xml @ 8:a58527c632b7 draft

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author peter-waltman
date Mon, 11 Mar 2013 16:31:29 -0400
parents 563832f48c08
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comparison
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7:2efa1a284546 8:a58527c632b7
33 ---- 33 ----
34 34
35 **Parameters** 35 **Parameters**
36 36
37 - **Z-transform data?** - Specify whether or not to Z-transform the rows (mean=0, sd=1) 37 - **Z-transform data?** - Specify whether or not to Z-transform the rows (mean=0, sd=1)
38 - **Variance Metric for Genes** - Specify Metric to use for calculating Gene Variance. Choice of: 38 - **Variance Metric for Genes** - Specify Metric to use for calculating Gene Variance. Choice of
39 39
40 * Median Absolute Deviation (MAD) 40 * Median Absolute Deviation (MAD)
41 * Maximum Absolute Deviation - similar to MAD, but uses the _Maximum_, instead of the Median Absolute Deviatioin 41 * Maximum Absolute Deviation - similar to MAD, but uses the _Maximum_, instead of the Median Absolute Deviatioin
42 * Standard Deviation 42 * Standard Deviation
43 43
44 - **Percentage of Samples Passing** Percent of samples with an IPL that passes the threshold. Choice of: 44
45 - **Percentage of Samples Passing** Percent of samples with an IPL that passes the threshold. Choice of
45 46
46 * Integer Value - indicate the exact number of genes that are to be kept 47 * Integer Value - indicate the exact number of genes that are to be kept
47 * Real Value in [0,1] - indicate the percentage of genes that are to be kept 48 * Real Value in [0,1] - indicate the percentage of genes that are to be kept
48 49
49
50
51 </help> 50 </help>
52 </tool> 51 </tool>