Mercurial > repos > peter-waltman > ucsc_cluster_tools2

diff cluster.tools/consensus.clustering.xml @ 8:a58527c632b7 draft

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Uploaded
author peter-waltman
date Mon, 11 Mar 2013 16:31:29 -0400
parents 0decf3fd54bc
children
line wrap: on
line diff
--- a/cluster.tools/consensus.clustering.xml	Mon Mar 04 04:11:28 2013 -0500
+++ b/cluster.tools/consensus.clustering.xml	Mon Mar 11 16:31:29 2013 -0400
@@ -13,7 +13,13 @@
 -k ${kmax} 
 -r ${reps} 
 -f ${finalLinkage}
--o ${output} 
+#if str($direction) == "rows":
+-o ${rdata_output_rows}
+#end if
+
+#if str($direction) == "cols":
+-o ${rdata_output_cols}
+#end if
 -h $report 
 -p ${report.files_path}
 
@@ -89,7 +95,12 @@
     </inputs>
     <outputs>
       <data format="html" name="report" label="Consensus Clustering Report (HTML)"/>
-      <data format="rdata" name="output" label="Consensus Clustering Data (RData)"/>
+      <data format="rdata" name="rdata_output_rows" label="Consensus Clustering Results; Gene Clusters (RData)">
+        <filter>(direction)=="rows"</filter>
+      </data>
+      <data format="rdata" name="rdata_output_cols" label="Consensus Clustering Results; Sample Clusters (RData)">
+        <filter>(direction)=="cols"</filter>
+      </data>
     </outputs>
 <help>
 .. class:: infomark