|
8
|
1 <tool id="cluster_tab_2_rdata" name="Convert tab-delimitted Cluster Assignments to RData" force_history_refresh="True">
|
|
|
2 <command interpreter="python">cluster.tab.2.rdata.py
|
|
|
3 -d $dataset
|
|
|
4 -o ${output}
|
|
|
5
|
|
|
6 </command>
|
|
|
7 <inputs>
|
|
|
8 <param name="dataset" type="data" label="Tab-delimited List of Cluster Assignments"/>
|
|
|
9 </inputs>
|
|
|
10 <outputs>
|
|
|
11 <data format="rdata" name="output" label="Cluster RData File"/>
|
|
|
12 </outputs>
|
|
|
13 <help>
|
|
|
14 .. class:: infomark
|
|
|
15
|
|
|
16 **Convert tab-delimitted cluster assignments to RData file** - Tool to convert a cluster assignment in tab-delimited format into an RData file format that can be read by the other tools in the Cluster-Tools Suite, e.g. The Kaplan-Meier Survival Plotting Tools
|
|
|
17
|
|
|
18 **OUTPUT:** A new RData file, with the cluster assignments stored as a named numeric vector
|
|
|
19
|
|
|
20 ----
|
|
|
21
|
|
|
22 **Parameters**
|
|
|
23
|
|
|
24 - **Cluster Assignment Matrix in tab-delimited format** Tab-delimited file AND MUST have a header line!
|
|
|
25
|
|
|
26 </help>
|
|
|
27 </tool>
|
