diff cluster.tools/remove.tcga.normals.xml @ 2:b442996b66ae draft

Uploaded

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/cluster.tools/remove.tcga.normals.xml	Wed Feb 27 20:17:04 2013 -0500
@@ -0,0 +1,28 @@
+<tool id="remove_tcga_normal_samples" name="Remove TGCA Normal Samples" force_history_refresh="True">
+    <command interpreter="python">remove.tcga.normals.py
+-d $dataset
+-o ${output}
+
+</command>
+    <inputs>
+    	<param name="dataset" type="data" format='tabular' label="Matrix containing TCGA Normal Samples"/>
+    </inputs>
+    <outputs>
+        <data format="tabular" name="output" label="Tumor Sample Matrix"/>
+    </outputs>
+<help>
+.. class:: infomark
+     
+**Remove Normal Samples** - Tool to remove the normal samples from a matrix **(ASSUMES samples are in the columns of matrix)**
+
+**OUTPUT:**  A new matrix without normal samples
+
+----
+
+**INPUT**
+
+- **Matrix that contains normal samples** Input matrix that potentially contains normal samples 
+
+
+</help>
+</tool>