Mercurial > repos > pavanvidem > dexseq

changeset 3:19fe55161ad0 draft

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Uploaded
author pavanvidem
date Fri, 28 Aug 2015 09:24:08 -0400
parents 28f42c7e6b12
children aa92ffbce394
files tool_dependancy.xml tool_dependencies.xml
diffstat 2 files changed, 31 insertions(+), 31 deletions(-) [+]
line wrap: on
line diff
--- a/tool_dependancy.xml	Fri Aug 28 08:43:24 2015 -0400
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,31 +0,0 @@
-<?xml version="1.0"?>
-<tool_dependency>
-    <package name="R" version="3.1.2">
-        <repository name="package_r_3_1_2" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
-    </package>
-    <package name="libxml2" version="2.9.1">
-        <repository name="package_libxml2_2_9_1" owner="devteam" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
-    </package>
-    <package name="deseq2" version="1.6.1">
-        <repository name="package_deseq2_1_6_1" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
-    </package>
-    <package name="dexseq" version="1.14.1">
-        <install version="1.0">
-            <actions>
-                <action type="setup_r_environment">
-                    <repository name="package_r_3_1_2" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
-                        <package name="R" version="3.1.2" />
-                    </repository>
-                    <package>https://github.com/bgruening/download_store/raw/master/DEXSeq_1.14.1/Biostrings_2.36.4.tar.gz</package>
-                    <package>https://github.com/bgruening/download_store/raw/master/DEXSeq_1.14.1/hwriter_1.3.2.tar.gz</package>
-                    <package>https://github.com/bgruening/download_store/raw/master/DEXSeq_1.14.1/statmod_1.4.21.tar.gz</package>
-                    <package>https://github.com/bgruening/download_store/raw/master/DEXSeq_1.14.1/biomaRt_2.24.0.tar.gz</package>
-                    <package>https://github.com/bgruening/download_store/raw/master/DEXSeq_1.14.1/Rsamtools_1.20.4.tar.gz</package>
-                </action>
-            </actions>
-        </install>
-        <readme>
-        Differential exon usage based on the negative binomial distribution.
-        </readme>
-    </package>
-</tool_dependency>
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool_dependencies.xml	Fri Aug 28 09:24:08 2015 -0400
@@ -0,0 +1,31 @@
+<?xml version="1.0"?>
+<tool_dependency>
+    <package name="R" version="3.1.2">
+        <repository changeset_revision="41f43a2064ba" name="package_r_3_1_2" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+    </package>
+    <package name="libxml2" version="2.9.1">
+        <repository changeset_revision="926b471a2e43" name="package_libxml2_2_9_1" owner="devteam" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+    </package>
+    <package name="deseq2" version="1.6.1">
+        <repository changeset_revision="5beee6b62be7" name="package_deseq2_1_6_1" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+    </package>
+    <package name="dexseq" version="1.14.1">
+        <install version="1.0">
+            <actions>
+                <action type="setup_r_environment">
+                    <repository changeset_revision="41f43a2064ba" name="package_r_3_1_2" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
+                        <package name="R" version="3.1.2" />
+                    </repository>
+                    <package>https://github.com/bgruening/download_store/raw/master/DEXSeq_1.14.1/Biostrings_2.36.4.tar.gz</package>
+                    <package>https://github.com/bgruening/download_store/raw/master/DEXSeq_1.14.1/hwriter_1.3.2.tar.gz</package>
+                    <package>https://github.com/bgruening/download_store/raw/master/DEXSeq_1.14.1/statmod_1.4.21.tar.gz</package>
+                    <package>https://github.com/bgruening/download_store/raw/master/DEXSeq_1.14.1/biomaRt_2.24.0.tar.gz</package>
+                    <package>https://github.com/bgruening/download_store/raw/master/DEXSeq_1.14.1/Rsamtools_1.20.4.tar.gz</package>
+                </action>
+            </actions>
+        </install>
+        <readme>
+        Differential exon usage based on the negative binomial distribution.
+        </readme>
+    </package>
+</tool_dependency>