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3
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1 <?xml version="1.0"?>
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2 <tool_dependency>
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9
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3 <package name="R" version="3.2.0">
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4 <repository changeset_revision="d973c8e9b29e" name="package_r_3_2_0" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
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3
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5 </package>
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24
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6 <package name="cairo" version="1.12.14">
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7 <repository changeset_revision="8f011e7388e1" name="package_cairo_1_12_14" owner="devteam" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
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8 </package>
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16
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9 <package name="tiff" version="4.0.3">
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20
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10 <repository changeset_revision="3fecd5a9a64c" name="package_tiff_4_0_3" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
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16
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11 </package>
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23
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12 <package name="dexseq" version="1.14.2">
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3
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13 <install version="1.0">
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14 <actions>
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15 <action type="setup_r_environment">
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9
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16 <repository changeset_revision="d973c8e9b29e" name="package_r_3_2_0" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
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17 <package name="R" version="3.2.0" />
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4
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18 </repository>
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19
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19 <repository changeset_revision="3fecd5a9a64c" name="package_tiff_4_0_3" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
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16
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20 <package name="tiff" version="4.0.3" />
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21 </repository>
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24
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22 <repository changeset_revision="8f011e7388e1" name="package_cairo_1_12_14" owner="devteam" toolshed="https://testtoolshed.g2.bx.psu.edu">
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23 <package name="cairo" version="1.12.14" />
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24 </repository>
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15
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25 <package>https://github.com/bgruening/download_store/raw/master/DEXSeq_1.14.2/Cairo_1.5-8.tar.gz</package>
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14
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27 <package>https://github.com/bgruening/download_store/raw/master/DEXSeq_1.14.2/getopt_1.20.0.tar.gz</package>
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29 <package>https://github.com/bgruening/download_store/raw/master/DEXSeq_1.14.2/futile.options_1.0.0.tar.gz</package>
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30 <package>https://github.com/bgruening/download_store/raw/master/DEXSeq_1.14.2/futile.logger_1.4.1.tar.gz</package>
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31 <package>https://github.com/bgruening/download_store/raw/master/DEXSeq_1.14.2/snow_0.3-13.tar.gz</package>
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33 <package>https://github.com/bgruening/download_store/raw/master/DEXSeq_1.14.2/BiocGenerics_0.14.0.tar.gz</package>
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52 <package>https://github.com/bgruening/download_store/raw/master/DEXSeq_1.14.2/RColorBrewer_1.1-2.tar.gz</package>
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53 <package>https://github.com/bgruening/download_store/raw/master/DEXSeq_1.14.2/geneplotter_1.46.0.tar.gz</package>
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54 <package>https://github.com/bgruening/download_store/raw/master/DEXSeq_1.14.2/plyr_1.8.3.tar.gz</package>
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55 <package>https://github.com/bgruening/download_store/raw/master/DEXSeq_1.14.2/digest_0.6.8.tar.gz</package>
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58 <package>https://github.com/bgruening/download_store/raw/master/DEXSeq_1.14.2/magrittr_1.5.tar.gz</package>
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59 <package>https://github.com/bgruening/download_store/raw/master/DEXSeq_1.14.2/stringr_1.0.0.tar.gz</package>
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60 <package>https://github.com/bgruening/download_store/raw/master/DEXSeq_1.14.2/reshape2_1.4.1.tar.gz</package>
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61 <package>https://github.com/bgruening/download_store/raw/master/DEXSeq_1.14.2/dichromat_2.0-0.tar.gz</package>
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62 <package>https://github.com/bgruening/download_store/raw/master/DEXSeq_1.14.2/colorspace_1.2-6.tar.gz</package>
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63 <package>https://github.com/bgruening/download_store/raw/master/DEXSeq_1.14.2/munsell_0.4.2.tar.gz</package>
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64 <package>https://github.com/bgruening/download_store/raw/master/DEXSeq_1.14.2/labeling_0.3.tar.gz</package>
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65 <package>https://github.com/bgruening/download_store/raw/master/DEXSeq_1.14.2/scales_0.3.0.tar.gz</package>
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66 <package>https://github.com/bgruening/download_store/raw/master/DEXSeq_1.14.2/proto_0.3-10.tar.gz</package>
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69 <package>https://github.com/bgruening/download_store/raw/master/DEXSeq_1.14.2/Formula_1.2-1.tar.gz</package>
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70 <package>https://github.com/bgruening/download_store/raw/master/DEXSeq_1.14.2/latticeExtra_0.6-26.tar.gz</package>
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71 <package>https://github.com/bgruening/download_store/raw/master/DEXSeq_1.14.2/cluster_2.0.3.tar.gz</package>
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72 <package>https://github.com/bgruening/download_store/raw/master/DEXSeq_1.14.2/rpart_4.1-10.tar.gz</package>
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73 <package>https://github.com/bgruening/download_store/raw/master/DEXSeq_1.14.2/nnet_7.3-11.tar.gz</package>
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75 <package>https://github.com/bgruening/download_store/raw/master/DEXSeq_1.14.2/foreign_0.8-66.tar.gz</package>
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76 <package>https://github.com/bgruening/download_store/raw/master/DEXSeq_1.14.2/gridExtra_2.0.0.tar.gz</package>
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77 <package>https://github.com/bgruening/download_store/raw/master/DEXSeq_1.14.2/Hmisc_3.16-0.tar.gz</package>
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78 <package>https://github.com/bgruening/download_store/raw/master/DEXSeq_1.14.2/DESeq2_1.8.1.tar.gz</package>
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79 <package>https://github.com/bgruening/download_store/raw/master/DEXSeq_1.14.2/bitops_1.0-6.tar.gz</package>
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80 <package>https://github.com/bgruening/download_store/raw/master/DEXSeq_1.14.2/RCurl_1.95-4.7.tar.gz</package>
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81 <package>https://github.com/bgruening/download_store/raw/master/DEXSeq_1.14.2/biomaRt_2.24.0.tar.gz</package>
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82 <package>https://github.com/bgruening/download_store/raw/master/DEXSeq_1.14.2/hwriter_1.3.2.tar.gz</package>
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83 <package>https://github.com/bgruening/download_store/raw/master/DEXSeq_1.14.2/zlibbioc_1.14.0.tar.gz</package>
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84 <package>https://github.com/bgruening/download_store/raw/master/DEXSeq_1.14.2/Biostrings_2.36.4.tar.gz</package>
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85 <package>https://github.com/bgruening/download_store/raw/master/DEXSeq_1.14.2/Rsamtools_1.20.4.tar.gz</package>
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86 <package>https://github.com/bgruening/download_store/raw/master/DEXSeq_1.14.2/statmod_1.4.21.tar.gz</package>
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87 <package>https://github.com/bgruening/download_store/raw/master/DEXSeq_1.14.2/DEXSeq_1.14.2.tar.gz</package>
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3
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88 </action>
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21
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89 <action type="set_environment">
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22
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90 <environment_variable action="set_to" name="DEXSEQ_ROOT">$INSTALL_DIR/DEXSeq/</environment_variable>
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21
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91 </action>
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3
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92 </actions>
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93 </install>
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94 <readme>
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9
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95 DEXSeq in version
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3
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96 </readme>
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97 </package>
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98 </tool_dependency>
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