Mercurial > repos > pavanvidem > blockclust
comparison tool_dependencies.xml @ 0:daa913e85b5a draft
Uploaded
| author | pavanvidem |
|---|---|
| date | Mon, 19 Aug 2013 11:47:18 -0400 |
| parents | |
| children | 05c89fe76736 |
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| -1:000000000000 | 0:daa913e85b5a |
|---|---|
| 1 <?xml version="1.0"?> | |
| 2 <tool_dependency> | |
| 3 | |
| 4 <package name="blockbuster" version="1.0"> | |
| 5 <install version="1.0"> | |
| 6 <actions> | |
| 7 <action type="download_by_url">http://www.bioinf.uni-leipzig.de/~david/LIFE/blockbuster.tar.gz</action> | |
| 8 <action type="shell_command">make</action> | |
| 9 <action type="move_file"> | |
| 10 <source>blockbuster.x</source> | |
| 11 <destination>$INSTALL_DIR/bin</destination> | |
| 12 </action> | |
| 13 <action type="set_environment"> | |
| 14 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable> | |
| 15 </action> | |
| 16 </actions> | |
| 17 </install> | |
| 18 <readme> | |
| 19 | |
| 20 </readme> | |
| 21 </package> | |
| 22 | |
| 23 <package name="EDeN" version="1.0"> | |
| 24 <install version="1.0"> | |
| 25 <actions> | |
| 26 <action type="download_by_url">http://www.bioinf.uni-freiburg.de/~costa/EDeN.tgz</action> | |
| 27 <action type="shell_command">make</action> | |
| 28 <action type="move_file"> | |
| 29 <source>EDeN</source> | |
| 30 <destination>$INSTALL_DIR/bin</destination> | |
| 31 </action> | |
| 32 <action type="set_environment"> | |
| 33 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable> | |
| 34 </action> | |
| 35 </actions> | |
| 36 </install> | |
| 37 <readme> | |
| 38 | |
| 39 </readme> | |
| 40 </package> | |
| 41 | |
| 42 | |
| 43 | |
| 44 <!-- | |
| 45 <package name="BEDTools" version="1.0"> | |
| 46 <install version="1.0"> | |
| 47 <actions> | |
| 48 <action type="download_by_url">http://bedtools.googlecode.com/files/BEDTools.v2.17.0.tar.gz</action> | |
| 49 <action type="shell_command">make</action> | |
| 50 <action type="move_file"> | |
| 51 <source>bin/bamToBed</source> | |
| 52 <destination>$INSTALL_DIR/bin</destination> | |
| 53 </action> | |
| 54 <action type="set_environment"> | |
| 55 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable> | |
| 56 </action> | |
| 57 </actions> | |
| 58 </install> | |
| 59 <readme> | |
| 60 | |
| 61 </readme> | |
| 62 </package> | |
| 63 --> | |
| 64 </tool_dependency> |