Mercurial > repos > pavanvidem > blockbuster

annotate tool_dependencies.xml @ 11:2b72295385ef draft

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author pavanvidem
date Mon, 19 Aug 2013 11:38:30 -0400
parents 1a862304dea6
children 8b1ecf4c1cc6
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1 <?xml version="1.0"?>
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2 <tool_dependency>
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3 <!--
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4 <package name="blockbuster" version="1.0">
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5 <install version="1.0">
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6 <actions>
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7 <action type="download_by_url">http://www.bioinf.uni-leipzig.de/~david/LIFE/blockbuster.tar.gz</action>
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8 <action type="shell_command">make</action>
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9 <action type="move_file">
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10 <source>blockbuster.x</source>
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11 <destination>$INSTALL_DIR/bin</destination>
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12 </action>
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13 <action type="set_environment">
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14 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
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15 </action>
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16 </actions>
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17 </install>
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18 <readme>
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20 </readme>
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21 </package>
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24 <package name="BEDTools" version="1.0">
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25 <install version="1.0">
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26 <actions>
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27 <action type="download_by_url">http://bedtools.googlecode.com/files/BEDTools.v2.17.0.tar.gz</action>
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28 <action type="shell_command">make</action>
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29 <action type="move_file">
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30 <source>bin/bamToBed</source>
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31 <destination>$INSTALL_DIR/bin</destination>
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32 </action>
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33 <action type="set_environment">
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34 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
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35 </action>
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36 </actions>
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37 </install>
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38 <readme>
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40 </readme>
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41 </package>
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43 -->
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44 <package name="blockbuster" version="1.0">
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45 <install version="1.0">
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46 <actions>
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47 <action type="download_by_url">http://www.bioinf.uni-freiburg.de/~costa/EDeN.tgz</action>
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48 <action type="shell_command">make</action>
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49 <action type="move_file">
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50 <source>EDeN</source>
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51 <destination>$INSTALL_DIR/bin</destination>
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52 </action>
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53 <action type="set_environment">
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54 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
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55 </action>
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56 </actions>
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57 </install>
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58 <readme>
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60 </readme>
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61 </package>
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62 </tool_dependency>