Mercurial > repos > p.lucas > taxid_genusexpand_taxid2acc

changeset 16:992af66092f7 draft default tip

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Fix error in script
author p.lucas
date Thu, 28 Sep 2023 15:28:08 +0000
parents 932ba9e04f3a
children
files TAXID_genusexpand_taxid2acc.py
diffstat 1 files changed, 2 insertions(+), 1 deletions(-) [+]
line wrap: on
line diff
--- a/TAXID_genusexpand_taxid2acc.py	Thu Sep 28 13:55:56 2023 +0000
+++ b/TAXID_genusexpand_taxid2acc.py	Thu Sep 28 15:28:08 2023 +0000
@@ -496,7 +496,8 @@
 ##### MAIN
 def __main__():
     # load taxid_acc file
-    load_taxids(taxid_acc_tabular_f)
+    load_taxids(taxid_acc_in_f)
+    #load_taxids(taxid_acc_tabular_f)
     # check in ncbi taxonomy which acc number are in and out of given taxid
     add_host_chr_taxids_accnr_from_ori_list(taxidlist,
                                             accnrlist,