Mercurial > repos > p.lucas > abhaddock
changeset 8:59e22a98a99f draft default tip
Uploaded
author | p.lucas |
---|---|
date | Thu, 06 May 2021 09:34:40 +0000 |
parents | 9a64e7a9c3aa |
children | |
files | abhaddock_wrapper.xml |
diffstat | 1 files changed, 4 insertions(+), 3 deletions(-) [+] |
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--- a/abhaddock_wrapper.xml Thu May 06 09:21:22 2021 +0000 +++ b/abhaddock_wrapper.xml Thu May 06 09:34:40 2021 +0000 @@ -1,8 +1,8 @@ -<tool id="ABHADDOCK" name="ABHADDOCK" version="0"> +<tool id="ABHADDOCK" name="ABHADDOCK" version="1"> <description>Using ab_haddock_format.py after ANARCI.</description> <command detect_errors="exit_code"><![CDATA[ source /home/galaxy/data/_conda/bin/activate Ab-HADDOCK; - python2.7 /home/galaxy/HADDOCK-antibody-antigen/ab_haddock_format.py '${input}' '${output}' ${chain}; + python2.7 /home/galaxy/HADDOCK-antibody-antigen/ab_haddock_format.py '${input}' '${output1}' ${chain} > '${output2}'; source /home/galaxy/data/_conda/bin/deactivate ]]></command> <inputs> @@ -10,7 +10,8 @@ <param name="chain" type="text" label="Chain id to use." help="Chain id to use for the HADDOCK-formatted PDB structure."/> </inputs> <outputs> - <data name="output" format="pdb" /> + <data name="output1" format="pdb" /> + <data name="output2" format="txt" /> </outputs> <help> usage: ab_haddock_format.py [-h] pdb out chain