# HG changeset patch
# User p.lucas
# Date 1620293680 0
# Node ID 59e22a98a99f4d82bee553524c7d8b0f9a4abe59
# Parent  9a64e7a9c3aa0e1d9cf94093aa74e054dfe0d491
Uploaded

diff -r 9a64e7a9c3aa -r 59e22a98a99f abhaddock_wrapper.xml
--- a/abhaddock_wrapper.xml	Thu May 06 09:21:22 2021 +0000
+++ b/abhaddock_wrapper.xml	Thu May 06 09:34:40 2021 +0000
@@ -1,8 +1,8 @@
-<tool id="ABHADDOCK" name="ABHADDOCK" version="0">
+<tool id="ABHADDOCK" name="ABHADDOCK" version="1">
   <description>Using ab_haddock_format.py after ANARCI.</description>
   <command detect_errors="exit_code"><![CDATA[
     source /home/galaxy/data/_conda/bin/activate Ab-HADDOCK;
-    python2.7 /home/galaxy/HADDOCK-antibody-antigen/ab_haddock_format.py '${input}' '${output}' ${chain};
+    python2.7 /home/galaxy/HADDOCK-antibody-antigen/ab_haddock_format.py '${input}' '${output1}' ${chain} > '${output2}';
     source /home/galaxy/data/_conda/bin/deactivate
   ]]></command>
   <inputs>
@@ -10,7 +10,8 @@
     <param name="chain" type="text" label="Chain id to use." help="Chain id to use for the HADDOCK-formatted PDB structure."/>
   </inputs>
   <outputs>
-    <data name="output" format="pdb" />
+    <data name="output1" format="pdb" />
+    <data name="output2" format="txt" />
   </outputs>
   <help>
 usage: ab_haddock_format.py [-h] pdb out chain