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author oscar_b
date Mon, 24 Dec 2018 14:25:55 -0500
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1 <tool id="complex_splitter" name="Complex_Splitter" version="0.5.0">
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2 <description>Creates ensembles of individual chains for downstream RMSF processing</description>
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3 <requirements>
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4 <requirement type="package" version="8">openjdk</requirement>
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5 </requirements>
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6 <command detect_errors="aggressive"><![CDATA[
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7 java -Djava.awt.headless=true -jar '$__tool_directory__/ComplexSplitter.jar' '$input1' '$input2' '$input3'
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8 && cp ChainA.pdb '$output1'
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9 && cp ChainB.pdb '$output2'
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10 ]]></command>
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11 <inputs>
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12 <param name="input1" type="data" format="pdb" label="input1"/>
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13 <param name="input2" size="2" type="text" label="First chain:"/>
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14 <param name="input3" size="2" type="text" label="Second chain:"/>
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15 </inputs>
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16 <outputs>
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17 <data name="output1" format="pdb" label="First chain ensemble from ${on_string}"/>
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18 <data name="output2" format="pdb" label="Second chain ensemble from ${on_string}"/>
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19 </outputs>
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20 <tests>
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21 <test>
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22 <param name="input" ftype="pdb" value="2hdx-READY-ALIGNED.pdb"/>
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23 <output name="output1">
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24 <assert_contents>
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25 <has_text text="813"/>
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26 </assert_contents>
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27 </output>
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28 </test>
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29 </tests>
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30 <help><![CDATA[
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31 This program creates separate, individual ensembles of the two chains to be analyzed
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32 ]]></help>
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33 </tool>
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