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view ChainRenamer.xml @ 2:bab05e2eb133 draft default tip
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author | oscar_b |
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date | Fri, 21 Jun 2019 14:41:29 -0400 |
parents | 1d5378868593 |
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<tool id="chain_renamer" name="Chain_Renamer" version="0.5.0"> <description>Renames protein chains in MD ensemble to their original chain IDs</description> <requirements> <requirement type="package" version="8">openjdk</requirement> </requirements> <command detect_errors="aggressive"><![CDATA[ java -Djava.awt.headless=true -jar '$__tool_directory__/ChainRenamer.jar' '$input' ]]></command> <inputs> <param name="input" type="data" format="pdb" label="MD Ensemble chains to be renamed"/> </inputs> <outputs> <data name="output" format="pdb" label="Correct chain IDs from ${on_string}"/> </outputs> <tests> <test> <param name="input" ftype="pdb" value="2hdx-READY-ALIGNED.pdb"/> <output name="output"> <assert_contents> <has_text text="813"/> </assert_contents> </output> </test> </tests> <help><![CDATA[ This program renames the chain IDs of an ensemble proceeding from MD so that the original and correct chain IDs are in their correct location ]]></help> </tool>