Mercurial > repos > oinizan > frogs_3_1_0
changeset 1:f15bae5f0560 draft
planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers commit 29f220934cb0e28dca66d294be553a086116cd5e-dirty
| author | oinizan |
|---|---|
| date | Fri, 21 Dec 2018 08:40:50 -0500 |
| parents | 17d0e2920f00 |
| children | fcc5cf5a34dd |
| files | tool-data/phiX_db.loc tool-data/phiX_db.loc.sample |
| diffstat | 2 files changed, 40 insertions(+), 40 deletions(-) [+] |
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--- a/tool-data/phiX_db.loc Fri Dec 21 08:33:10 2018 -0500 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,40 +0,0 @@ -# Copyright (C) 2014 INRA -# -# This program is free software: you can redistribute it and/or modify -# it under the terms of the GNU General Public License as published by -# the Free Software Foundation, either version 3 of the License, or -# (at your option) any later version. -# -# This program is distributed in the hope that it will be useful, -# but WITHOUT ANY WARRANTY; without even the implied warranty of -# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the -# GNU General Public License for more details. -# -# You should have received a copy of the GNU General Public License -# along with this program. If not, see <http://www.gnu.org/licenses/>. -# -# -#This is a sample file that enables tools FROGS_filters to identify phix contaminant. You will #need to create or download Blast+ index. -#download link : http://genoweb.toulouse.inra.fr/frogs_databanks/contaminants -#Finally you will need to create phiX_db.loc file similar to this one in your galaxy -#tool-data directory.The phiX_db.loc file has this format (longer white space characters are -#TAB characters): -# -#<contaminant_name> <name> <file_path> -# -#First column will be the visible name in galaxy. -#So, for example, if you had phix indexed stored in -#/galaxy_databanks/phiX/ -#then the phiX_db.loc entry would look like this: -# -#phiX phiX /galaxy_databanks/phiX/phi.fa -# -#and your /galaxy_databanks/phiX/ directory -#would contain index files: -# -#-rwxrwxr-x 1 gpascal FROGS 5535 16 sept. 2015 phi.fa -#-rw-rwxr-- 1 gpascal FROGS 132 16 sept. 2015 phi.fa.nhr -#-rw-rwxr-- 1 gpascal FROGS 88 16 sept. 2015 phi.fa.nin -#-rw-rwxr-- 1 gpascal FROGS 1348 16 sept. 2015 phi.fa.nsq -# -
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tool-data/phiX_db.loc.sample Fri Dec 21 08:40:50 2018 -0500 @@ -0,0 +1,40 @@ +# Copyright (C) 2014 INRA +# +# This program is free software: you can redistribute it and/or modify +# it under the terms of the GNU General Public License as published by +# the Free Software Foundation, either version 3 of the License, or +# (at your option) any later version. +# +# This program is distributed in the hope that it will be useful, +# but WITHOUT ANY WARRANTY; without even the implied warranty of +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the +# GNU General Public License for more details. +# +# You should have received a copy of the GNU General Public License +# along with this program. If not, see <http://www.gnu.org/licenses/>. +# +# +#This is a sample file that enables tools FROGS_filters to identify phix contaminant. You will #need to create or download Blast+ index. +#download link : http://genoweb.toulouse.inra.fr/frogs_databanks/contaminants +#Finally you will need to create phiX_db.loc file similar to this one in your galaxy +#tool-data directory.The phiX_db.loc file has this format (longer white space characters are +#TAB characters): +# +#<contaminant_name> <name> <file_path> +# +#First column will be the visible name in galaxy. +#So, for example, if you had phix indexed stored in +#/galaxy_databanks/phiX/ +#then the phiX_db.loc entry would look like this: +# +#phiX phiX /galaxy_databanks/phiX/phi.fa +# +#and your /galaxy_databanks/phiX/ directory +#would contain index files: +# +#-rwxrwxr-x 1 gpascal FROGS 5535 16 sept. 2015 phi.fa +#-rw-rwxr-- 1 gpascal FROGS 132 16 sept. 2015 phi.fa.nhr +#-rw-rwxr-- 1 gpascal FROGS 88 16 sept. 2015 phi.fa.nin +#-rw-rwxr-- 1 gpascal FROGS 1348 16 sept. 2015 phi.fa.nsq +# +