Mercurial > repos > oinizan > frogs_2_0_0
changeset 3:2d996e4ddbcb draft
planemo upload commit f2e9d60ee5915e917083688cdc0d6f5d78f98028
| author | oinizan |
|---|---|
| date | Thu, 05 Apr 2018 09:47:04 -0400 |
| parents | a9c746142152 |
| children | c2e9b79e97a8 |
| files | tool-data/frogs_db.loc upload_tar.xml |
| diffstat | 2 files changed, 2 insertions(+), 51 deletions(-) [+] |
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--- a/tool-data/frogs_db.loc Thu Apr 05 09:41:15 2018 -0400 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,51 +0,0 @@ -# Copyright (C) 2014 INRA -# -# This program is free software: you can redistribute it and/or modify -# it under the terms of the GNU General Public License as published by -# the Free Software Foundation, either version 3 of the License, or -# (at your option) any later version. -# -# This program is distributed in the hope that it will be useful, -# but WITHOUT ANY WARRANTY; without even the implied warranty of -# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the -# GNU General Public License for more details. -# -# You should have received a copy of the GNU General Public License -# along with this program. If not, see <http://www.gnu.org/licenses/>. -# -# -#This is a sample file that enables tools FROGS_affiliations_OTU to use taxonomy database for -#taxonomy affiliation. You will need to create or download Blast+ index and train your database -#for RDP classifier these data files. -#download link : http://genoweb.toulouse.inra.fr/frogs_databanks/assignation -#Finally you will need to create frogs_db.loc file similar to this one in your galaxy -#tool-data directory.The frogs_db.loc file has this format (longer white space characters are -#TAB characters): -# -#<unique_database_name> <file_path> -# -#First column will be the visible name in galaxy. -#So, for example, if you had 16S silva 128 indexed stored in -#/galaxy_databanks/16S/silva_128/ -#then the frogs_db.loc entry would look like this: -# -#silva 128 16S /galaxy_databanks/16S/silva_128/silva_128_16S.fasta -# -#and your /galaxy_databanks/16S/silva_128/ directory -#would contain index files: -# -#-rw-r--r-- 1 mbernard FROGS 8097966 5 déc. 16:56 bergeyTrainingTree.xml -#-rw-r--r-- 1 mbernard FROGS 1572981589 5 déc. 16:56 genus_wordConditionalProbList.txt -#-rw-r--r-- 1 mbernard FROGS 1654 5 déc. 16:56 LICENCE.txt -#-rw-r--r-- 1 mbernard FROGS 1072228 5 déc. 16:56 logWordPrior.txt -#-rw-r--r-- 1 mbernard FROGS 940834335 5 déc. 16:56 silva_128_16S.fasta -#-rw-r--r-- 1 mbernard FROGS 152606489 5 déc. 16:56 silva_128_16S.fasta.nhr -#-rw-r--r-- 1 mbernard FROGS 6918588 5 déc. 16:56 silva_128_16S.fasta.nin -#-rw-r--r-- 1 mbernard FROGS 205320030 5 déc. 16:56 silva_128_16S.fasta.nsq -#-rw-r--r-- 1 mbernard FROGS 281 5 déc. 16:56 silva_128_16S.fasta.properties -#-rw-r--r-- 1 mbernard FROGS 3420464 5 déc. 16:56 silva_128_16S.tax -#-rw-r--r-- 1 mbernard FROGS 964048 5 déc. 16:57 wordConditionalProbIndexArr.txt -# -#db.fasta db.fasta db.fasta ${__HERE__}/test-data/db.fasta -#db.fasta db.fasta db.fasta /root/mydisk/FROGS-wrappers/test-data/db.fasta -db.fasta A sample databank /root/mydisk/FROGS-wrappers/test-data/db.fasta