Mercurial > repos > oinizan > frogs

changeset 8:348387ffe793 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
"planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/ commit 2024a13846ea6f9bd94ae62e3b2a5a3aba8cd304-dirty"
author oinizan
date Mon, 23 Aug 2021 09:25:07 +0000
parents 76dcbe930b1d
children 7bf54edaba24
files macros.xml static/images/FROGS_db.png
diffstat 2 files changed, 15 insertions(+), 0 deletions(-) [+]
line wrap: on
line diff
--- a/macros.xml	Wed Aug 18 15:43:00 2021 +0000
+++ b/macros.xml	Mon Aug 23 09:25:07 2021 +0000
@@ -61,6 +61,21 @@
                 eprint = {https://academic.oup.com/bioinformatics/article-pdf/34/8/1287/25120140/btx791\_supplementary\_file.pdf},
             }
         </citation>
+        <citation type="bibtex">
+            @article{10.1093/bib/bbab318,
+                author = {Bernard, Maria and Rué, Olivier and Mariadassou, Mahendra and Pascal, Géraldine},
+                title = "{FROGS: a powerful tool to analyse the diversity of fungi with special management of internal transcribed spacers}",
+                journal = {Briefings in Bioinformatics},
+                year = {2021},
+                month = {08},
+                abstract = "{Fungi are present in all environments. They fulfil important ecological functions and play a crucial role in the food industry. Their accurate characterization is thus indispensable, particularly through metabarcoding. The most frequently used markers to monitor fungi are ITSs. These markers are the best documented in public databases but have one main weakness: polymerase chain reaction amplification may produce non-overlapping reads in a significant fraction of the fungi. When these reads are filtered out, traditional metabarcoding pipelines lose part of the information and consequently produce biased pictures of the composition and structure of the environment under study. We developed a solution that enables processing of the entire set of reads including both overlapping and non-overlapping, thus providing a more accurate picture of fungal communities. Our comparative tests using simulated and real data demonstrated the effectiveness of our solution, which can be used by both experts and non-specialists on a command line or through the Galaxy-based web interface.}",
+                issn = {1477-4054},
+                doi = {10.1093/bib/bbab318},
+                url = {https://doi.org/10.1093/bib/bbab318},
+                note = {bbab318},
+                eprint = {https://academic.oup.com/bib/advance-article-pdf/doi/10.1093/bib/bbab318/39805849/bbab318.pdf},
+            }
+        </citation>
     </xml>
 
 
Binary file static/images/FROGS_db.png has changed