Mercurial > repos > oinizan > frogs
diff preprocess.xml @ 24:48a1ff3045e2 draft
planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/ commit 2472c451b3e27c98ce60b2e56a78fd3fbe0fb2d6-dirty
| author | oinizan |
|---|---|
| date | Mon, 22 May 2023 08:34:12 +0000 |
| parents | 5cd82f533de6 |
| children | 646bee69560f |
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--- a/preprocess.xml Mon May 22 08:28:45 2023 +0000 +++ b/preprocess.xml Mon May 22 08:34:12 2023 +0000 @@ -303,6 +303,35 @@ <param name="R2_size" value="266" /> <param name="mismatch_rate" value="0.15" /> <conditional name="merge_software_type"> + <param name="merge_software" value="flash" /> + <param name="expected_amplicon_size" value="420" /> + </conditional> + <param name="keep_unmerged" value="Yes" /> + </conditional> + </conditional> + <param name="min_amplicon_size" value="44" /> + <param name="max_amplicon_size" value="490" /> + <conditional name="is_primer_in_seq"> + <param name="primer_choice" value="true" /> + <param name="five_prim_primer" value="GGCGVACGGGTGAGTAA" /> + <param name="three_prim_primer" value="GTGCCAGCNGCNGCGG" /> + </conditional> + </conditional> + <output name="count_file" file="references/01-prepro-flash.tsv" compare="diff" lines_diff="0" /> + <output name="summary_file" file="references/01-prepro-flash.html" compare="sim_size" delta="0" /> + </test> + <test> + <conditional name="sequencer_type"> + <param name="sequencer_selected" value="illumina" /> + <conditional name="input_type"> + <param name="input_type_selected" value="archive" /> + <param name="archive_file" ftype="tgz" value="input/test_dataset.tar.gz" /> + <conditional name="archive_type"> + <param name="archive_type_selected" value="paired" /> + <param name="R1_size" value="267" /> + <param name="R2_size" value="266" /> + <param name="mismatch_rate" value="0.15" /> + <conditional name="merge_software_type"> <param name="merge_software" value="vsearch" /> </conditional> <param name="keep_unmerged" value="Yes" />