comparison preprocess.xml @ 24:48a1ff3045e2 draft

planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/ commit 2472c451b3e27c98ce60b2e56a78fd3fbe0fb2d6-dirty

23:5cd82f533de6

                        <param name="archive_type_selected" value="paired" />
                        <param name="R1_size" value="267" />
                        <param name="R2_size" value="266" />
                        <param name="mismatch_rate" value="0.15" />
                        <conditional name="merge_software_type">
                            <param name="merge_software" value="vsearch" />
                        </conditional>
                        <param name="keep_unmerged" value="Yes" />
                    </conditional>
                </conditional>

24:48a1ff3045e2

                        <param name="archive_type_selected" value="paired" />
                        <param name="R1_size" value="267" />
                        <param name="R2_size" value="266" />
                        <param name="mismatch_rate" value="0.15" />
                        <conditional name="merge_software_type">
                            <param name="merge_software" value="flash" />
                            <param name="expected_amplicon_size" value="420" />
                        </conditional>
                        <param name="keep_unmerged" value="Yes" />
                    </conditional>
                </conditional>
                <param name="min_amplicon_size" value="44" />
                <param name="max_amplicon_size" value="490" />
                  <conditional name="is_primer_in_seq">
                    <param name="primer_choice" value="true" />
                    <param name="five_prim_primer" value="GGCGVACGGGTGAGTAA" />
                    <param name="three_prim_primer" value="GTGCCAGCNGCNGCGG" />
                </conditional>
            </conditional>
            <output name="count_file" file="references/01-prepro-flash.tsv" compare="diff" lines_diff="0" />
            <output name="summary_file" file="references/01-prepro-flash.html" compare="sim_size" delta="0" />
        </test>
        <test>
            <conditional name="sequencer_type">
                <param name="sequencer_selected" value="illumina" />
                <conditional name="input_type">
                    <param name="input_type_selected" value="archive" />
                    <param name="archive_file" ftype="tgz" value="input/test_dataset.tar.gz" />
                    <conditional name="archive_type">
                        <param name="archive_type_selected" value="paired" />
                        <param name="R1_size" value="267" />
                        <param name="R2_size" value="266" />
                        <param name="mismatch_rate" value="0.15" />
                        <conditional name="merge_software_type">
                            <param name="merge_software" value="vsearch" />
                        </conditional>
                        <param name="keep_unmerged" value="Yes" />
                    </conditional>
                </conditional>