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comparison data_manager/FROGS_data_manager.xml @ 2:2d2f8d990bff draft

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"planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/ commit 052af90b7eee0ccaff79e64e4706a8fbdb235783"
author oinizan
date Thu, 19 Aug 2021 08:16:02 +0000
parents 04845601de8c
children 34192d63196e
comparison
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1:04845601de8c 2:2d2f8d990bff
38 <outputs> 38 <outputs>
39 <data name="output" format="data_manager_json"/> 39 <data name="output" format="data_manager_json"/>
40 </outputs> 40 </outputs>
41 <help> 41 <help>
42 42
43 @HELP_LOGO@ 43 .. image:: static/images/FROGS_logo.png
44 :height: 144
45 :width: 110
44 46
45 FROGS datamanager allows to download preformated databases for FROGS Affiliation OTU tool. 47 FROGS datamanager allows to download preformated databases for FROGS Affiliation OTU tool.
46 48
47 All databases are available at http://genoweb.toulouse.inra.fr/frogs_databanks/assignation/. 49 All databases are available at http://genoweb.toulouse.inra.fr/frogs_databanks/assignation/.
48 50
49 This tools is based on the `FROGS_databases.tsv.txt &lt;http://genoweb.toulouse.inra.fr/frogs_databanks/assignation/FROGS_databases.tsv&gt;`_, that we update each time a new database is formatted. 51 This tools is based on the `FROGS_databases.tsv.txt &lt;http://genoweb.toulouse.inra.fr/frogs_databanks/assignation/FROGS_databases.tsv&gt;`_, that we update each time a new database is formatted.
50 52
51 .. image:: static/images/FROGS_db.png 53 .. image:: static/images/FROGS_db.png
52 :height: 157 54 :height: 157
53 :width: 961 55 :width: 961
54 56
55 You may download all databases, but you may (should) filter whished database on different criteria: 57 You may download all databases, but you may (should) filter whished database on different criteria:
56 58
57 - on a date, to download only last formated databases 59 - on a date, to download only last formated databases
58 - on an amplicon type 60 - on an amplicon type
59 - on a base name 61 - on a base name
60 - eventually on a filtered name, this may be the case for example, for 16S SILVA database, for which we provide reference sequence with pintail score above a threshold 62 - eventually on a filtered name, this may be the case for example, for 16S SILVA database, for which we provide reference sequence with pintail score above a threshold
61 63
62 Last option allow you to download only last version of previously selected databases, indeed we provide reference database since 2016 with for example, around 1 version of SILVA per year. 64 Last option allow you to download only last version of previously selected databases, indeed we provide reference database since 2016 with for example, around 1 version of SILVA per year.
65
66 **Contact**
67
68 Contacts: frogs-support@inrae.fr
69
70 Repositories: https://github.com/geraldinepascal/FROGS, https://github.com/geraldinepascal/FROGS-wrappers
71
72 Website: http://frogs.toulouse.inrae.fr/
73
63 </help> 74 </help>
64 </tool> 75 </tool>