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changeset 3:f987a1058654 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/spades commit 681797a4ef698cba492fd19c57c10f7c807e885e
author iuc
date Fri, 21 Sep 2018 17:41:49 -0400
parents 210b731002af
children 2682640145c8
files spades.xml
diffstat 1 files changed, 5 insertions(+), 1 deletions(-) [+]
line wrap: on
line diff
--- a/spades.xml	Mon Oct 30 07:19:57 2017 -0400
+++ b/spades.xml	Fri Sep 21 17:41:49 2018 -0400
@@ -1,10 +1,14 @@
-<tool id="spades" name="SPAdes" version="3.11.1">
+<tool id="spades" name="SPAdes" version="3.11.1+galaxy1">
     <description>genome assembler for regular and single-cell projects</description>
     <requirements>
         <requirement type="package" version="3.11.1">spades</requirement>
     </requirements>
     <stdio>
         <exit_code range="1:" />
+        <regex match="The reads contain too many k-mers to fit into available memory"
+           source="stdout"
+           level="fatal_oom"
+	   description="Out of memory error occurred" />
     </stdio>
     <command>
     <![CDATA[