Mercurial > repos > nilesh > sickle_dev
changeset 1:db0c767dbe09
first commit
| author | nilesh |
|---|---|
| date | Mon, 15 Jul 2013 10:11:13 -0500 |
| parents | 12f0ce236f6e |
| children | b04d24abd573 |
| files | tool_dependencies.xml |
| diffstat | 1 files changed, 28 insertions(+), 0 deletions(-) [+] |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tool_dependencies.xml Mon Jul 15 10:11:13 2013 -0500 @@ -0,0 +1,28 @@ +<?xml version="1.0"?> +<tool_dependency> + <package name="sickle" version="1.21.0"> + <install version="1.0"> + <actions> + <action type="download_by_url">http://zlib.net/zlib-1.2.8.tar.gz</action> + <action type="shell_command">./configure --prefix=$INSTALL_DIR/zlib</action> + <action type="shell_command">make</action> + <action type="shell_command">make install prefix=$INSTALL_DIR/zlib</action> + <action type="set_environment"> + <environment_variable name="ZLIB_PATH" action="set_to">$INSTALL_DIR/zlib/lib</environment_variable> + </action> + <action type="shell_command">git clone https://github.com/najoshi/sickle.git</action> + <action type="shell_command">make LIBS="-L$INSTALL_DIR/zlib/lib -lz"</action> + <action type="move_file"> + <source>sickle</source> + <destination>$INSTALL_DIR/bin</destination> + </action> + <action type="set_environment"> + <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable> + </action> + </actions> + </install> + <readme> + Sickle requires a C compiler; GCC or clang are recommended. Sickle relies on Heng Li's kseq.h, which is bundled with the source. It also requires zlib, which is included in this repo. + </readme> + </package> +</tool_dependency>