Mercurial > repos > nilesh > sickle
changeset 1:b8d51c1a665d
first commit
author | nilesh |
---|---|
date | Fri, 12 Jul 2013 15:55:41 -0500 |
parents | 16af94a7a1ee |
children | 9159a1bf8615 |
files | tool_dependencies.xml |
diffstat | 1 files changed, 40 insertions(+), 0 deletions(-) [+] |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tool_dependencies.xml Fri Jul 12 15:55:41 2013 -0500 @@ -0,0 +1,40 @@ +<?xml version="1.0"?> +<tool_dependency> + <package name="zlib" version="1.2.8"> + <install version="1.0"> + <actions> + <action type="download_by_url">http://zlib.net/zlib-1.2.8.tar.gz</action> + <action type="shell_command">./configure --prefix=$INSTALL_DIR/zlib</action> + <action type="shell_command">make</action> + <action type="shell_command">make install prefix=$INSTALL_DIR/zlib</action> + <action type="set_environment"> + <environment_variable name="ZLIB_PATH" action="set_to">$INSTALL_DIR/zlib/lib</environment_variable> + </action> + <action type="set_environment"> + <environment_variable name="LD_LIBRARY_PATH" action="prepend_to">$INSTALL_DIR/zlib/lib</environment_variable> + </action> + </actions> + </install> + <readme> + zlib is designed to be a free, general-purpose, legally unencumbered -- that is, not covered by any patents -- lossless data-compression library for use on virtually any computer hardware and operating system. The zlib data format is itself portable across platforms. + </readme> + </package> + <package name="sickle" version="1.21.0"> + <install version="1.0"> + <actions> + <action type="shell_command">git clone https://github.com/najoshi/sickle.git</action> + <action type="shell_command">make LIBS="-L$ENV[ZLIB_PATH] -lz"</action> + <action type="move_file"> + <source>sickle</source> + <destination>$INSTALL_DIR/bin</destination> + </action> + <action type="set_environment"> + <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable> + </action> + </actions> + </install> + <readme> + Sickle requires a C compiler; GCC or clang are recommended. Sickle relies on Heng Li's kseq.h, which is bundled with the source. It also requires zlib, which is included in this repo. + </readme> + </package> +</tool_dependency>