Mercurial > repos > nilesh > rseqc_dev2

changeset 0:0d133c7c387e

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Uploaded
author nilesh
date Thu, 18 Jul 2013 12:27:05 -0400
parents
children dc3b3b88fbab
files tool_dependencies.xml
diffstat 1 files changed, 22 insertions(+), 0 deletions(-) [+]
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool_dependencies.xml	Thu Jul 18 12:27:05 2013 -0400
@@ -0,0 +1,22 @@
+<?xml version="1.0"?>
+<tool_dependency>
+    
+    <package name="rseqc" version="2.3.7">
+        <install version = "1.0">
+            <actions>
+                <action type="download_by_url">https://sourceforge.net/projects/rseqc/files/RSeQC-2.3.7.tar.gz</action>
+                <action type="shell_command">python setup.py install --root $INSTALL_DIR/lib/rseqc</action>
+                <action type="set_environment">
+                    <environment_variable name="PYTHONPATH" action="prepend_to">$INSTALL_DIR/lib/rseqc/usr/local/lib/python2.7/site-packages</environment_variable>
+                </action>
+                <action type="set_environment">
+                    <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/lib/rseqc/usr/local/bin</environment_variable>
+                </action>
+            </actions>
+        </install>
+        <readme>
+        	RSeQC version 2.3.7, documentation available at http://dldcc-web.brc.bcm.edu/lilab/liguow/CGI/rseqc/_build/html/index.html#.
+        </readme>
+    </package>
+    
+</tool_dependency>