Mercurial > repos > nilesh > rnaseqc

changeset 6:e56976d40a6d

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debugging
author nilesh
date Mon, 15 Jul 2013 13:58:10 -0500
parents 02403fc450e4
children 6baaaaa1f858
files tool_dependencies.xml
diffstat 1 files changed, 5 insertions(+), 1 deletions(-) [+]
line wrap: on
line diff
--- a/tool_dependencies.xml	Mon Jul 15 13:54:31 2013 -0500
+++ b/tool_dependencies.xml	Mon Jul 15 13:58:10 2013 -0500
@@ -12,7 +12,11 @@
                    </repository>
                 </action>
     			<action type="download_by_url">http://sourceforge.net/projects/bio-bwa/files/bwa-0.7.5a.tar.bz2</action>
-    			<action type="shell_command">cd ./bwa-0.7.5a &amp;&amp; make LIBS="-L/$ZLIB_PATH -lm -lz -lpthread"</action>
+    			<!-- <action type="shell_command">cd ./bwa-0.7.5a &amp;&amp; make LIBS="-L/$ZLIB_PATH -lm -lz -lpthread"</action> -->
+    			<action type="move_file">
+                    <source>.</source>
+                    <destination>$INSTALL_DIR</destination>
+                </action>
     			<action type="set_environment">
     				<environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
     			</action>