Mercurial > repos > nilesh > rnaseqc
comparison tool_dependencies.xml @ 6:e56976d40a6d
debugging
| author | nilesh |
|---|---|
| date | Mon, 15 Jul 2013 13:58:10 -0500 |
| parents | 02403fc450e4 |
| children | 6baaaaa1f858 |
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| 5:02403fc450e4 | 6:e56976d40a6d |
|---|---|
| 10 <repository changeset_revision="28f618926504" name="zlib" owner="nilesh" toolshed="http://testtoolshed.g2.bx.psu.edu"> | 10 <repository changeset_revision="28f618926504" name="zlib" owner="nilesh" toolshed="http://testtoolshed.g2.bx.psu.edu"> |
| 11 <package name="zlib" version="1.2.8" /> | 11 <package name="zlib" version="1.2.8" /> |
| 12 </repository> | 12 </repository> |
| 13 </action> | 13 </action> |
| 14 <action type="download_by_url">http://sourceforge.net/projects/bio-bwa/files/bwa-0.7.5a.tar.bz2</action> | 14 <action type="download_by_url">http://sourceforge.net/projects/bio-bwa/files/bwa-0.7.5a.tar.bz2</action> |
| 15 <action type="shell_command">cd ./bwa-0.7.5a && make LIBS="-L/$ZLIB_PATH -lm -lz -lpthread"</action> | 15 <!-- <action type="shell_command">cd ./bwa-0.7.5a && make LIBS="-L/$ZLIB_PATH -lm -lz -lpthread"</action> --> |
| 16 <action type="move_file"> | |
| 17 <source>.</source> | |
| 18 <destination>$INSTALL_DIR</destination> | |
| 19 </action> | |
| 16 <action type="set_environment"> | 20 <action type="set_environment"> |
| 17 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable> | 21 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable> |
| 18 </action> | 22 </action> |
| 19 </actions> | 23 </actions> |
| 20 </install> | 24 </install> |