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changeset 18:c139b9abe064 draft

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Changed env parameter in summarize_unique_barcodes.xml
author nikos
date Wed, 11 Feb 2015 07:32:32 -0500
parents 31f25b37187b
children ceb96c265bd1
files summarize_unique_barcodes.xml
diffstat 1 files changed, 3 insertions(+), 1 deletions(-) [+]
line wrap: on
line diff
--- a/summarize_unique_barcodes.xml	Wed Feb 11 06:27:12 2015 -0500
+++ b/summarize_unique_barcodes.xml	Wed Feb 11 07:32:32 2015 -0500
@@ -8,6 +8,8 @@
         <requirement type="R-module">RNAprobR</requirement>
         <requirement type="package" version="1.0.0">RNAprobR</requirement>
         <requirement type="set_environment">RNA_PROBING_SCRIPT_PATH</requirement>
+        <requirement type="set_environment">RNAprobR_PATH</requirement>
+
     </requirements>
 
     <command interpreter="bash">
@@ -30,7 +32,7 @@
             -t
         #end if
 
-        -r \$RNA_PROBING_SCRIPT_PATH
+        -r \$RNAprobR_PATH
     </command>
 
     <!-- basic error handling -->