Mercurial > repos > nikos > package_rna_probing_1_0_0
changeset 0:87b5d29e28cc draft
Uploaded
| author | nikos |
|---|---|
| date | Tue, 04 Nov 2014 12:59:08 -0500 |
| parents | |
| children | 4c2d40c93f21 |
| files | tool_dependencies.xml |
| diffstat | 1 files changed, 58 insertions(+), 0 deletions(-) [+] |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tool_dependencies.xml Tue Nov 04 12:59:08 2014 -0500 @@ -0,0 +1,58 @@ +<?xml version="1.0"?> +<tool_dependency> + <package name="R_3_1_1" version="3.1.1"> + <repository changeset_revision="d9964efbfbe3" name="package_r_3_1_1" owner="fubar" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" /> + </package> + + <package name="RNAprobR" version="1.0.0"> + <install version="1.0"> + <actions> + <action type="setup_r_environment"> + <repository changeset_revision="d9964efbfbe3" name="package_r_3_1_1" owner="fubar" toolshed="https://testtoolshed.g2.bx.psu.edu"> + <package name="R_3_1_1" version="3.1.1" /> + </repository> + <package>https://bitbucket.org/nikos_sidiropoulos/source_packages/raw/master/RNAprobing-1.0.0/Rcpp_0.11.3.tar.gz</package> + <package>https://bitbucket.org/nikos_sidiropoulos/source_packages/raw/master/raw/master/RNAprobing-1.0.0/plyr_1.8.1.tar.gz</package> + <package>https://bitbucket.org/nikos_sidiropoulos/source_packages/raw/master/RNAprobing-1.0.0/BiocGenerics_0.12.0.tar.gz</package> + <package>https://bitbucket.org/nikos_sidiropoulos/source_packages/raw/master/RNAprobing-1.0.0/Biobase_2.26.0.tar.gz</package> + <package>https://bitbucket.org/nikos_sidiropoulos/source_packages/raw/master/RNAprobing-1.0.0/S4Vectors_0.4.0.tar.gz</package> + <package>https://bitbucket.org/nikos_sidiropoulos/source_packages/raw/master/RNAprobing-1.0.0/IRanges_2.0.0.tar.gz</package> + <package>https://bitbucket.org/nikos_sidiropoulos/source_packages/raw/master/RNAprobing-1.0.0/GenomeInfoDb_1.2.2.tar.gz</package> + <package>https://bitbucket.org/nikos_sidiropoulos/source_packages/raw/master/RNAprobing-1.0.0/XVector_0.6.0.tar.gz</package> + <package>https://bitbucket.org/nikos_sidiropoulos/source_packages/raw/master/RNAprobing-1.0.0/GenomicRanges_1.18.1.tar.gz</package> + 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<package>https://bitbucket.org/nikos_sidiropoulos/source_packages/raw/master/RNAprobing-1.0.0/BBmisc_1.8.tar.gz</package> + <package>https://bitbucket.org/nikos_sidiropoulos/source_packages/raw/master/RNAprobing-1.0.0/fail_1.2.tar.gz</package> + <package>https://bitbucket.org/nikos_sidiropoulos/source_packages/raw/master/RNAprobing-1.0.0/stringr_0.6.2.tar.gz</package> + <package>https://bitbucket.org/nikos_sidiropoulos/source_packages/raw/master/RNAprobing-1.0.0/base64enc_0.1-2.tar.gz</package> + <package>https://bitbucket.org/nikos_sidiropoulos/source_packages/raw/master/RNAprobing-1.0.0/sendmailR_1.2-1.tar.gz</package> + <package>https://bitbucket.org/nikos_sidiropoulos/source_packages/raw/master/RNAprobing-1.0.0/BatchJobs_1.5.tar.gz</package> + <package>https://bitbucket.org/nikos_sidiropoulos/source_packages/raw/master/RNAprobing-1.0.0/BiocParallel_1.0.0.tar.gz</package> + <package>https://bitbucket.org/nikos_sidiropoulos/source_packages/raw/master/RNAprobing-1.0.0/GenomicAlignments_1.2.0.tar.gz</package> + <package>https://bitbucket.org/nikos_sidiropoulos/source_packages/raw/master/RNAprobing-1.0.0/rtracklayer_1.26.1.tar.gz</package> + <package>https://bitbucket.org/nikos_sidiropoulos/source_packages/raw/master/RNAprobing-1.0.0/biomaRt_2.22.0.tar.gz</package> + <package>https://bitbucket.org/nikos_sidiropoulos/source_packages/raw/master/RNAprobing-1.0.0/GenomicFeatures_1.18.2.tar.gz</package> + <package>https://bitbucket.org/nikos_sidiropoulos/source_packages/raw/master/RNAprobing-1.0.0/RNAprobR_0.99.0.tar.gz</package> + </action> + </actions> + </install> + <readme> + RNA probing data Analysis suite + Link to Bioconductor when the package gets approved. + Link to chapter here.. + </readme> + </package> +</tool_dependency>