comparison tool_dependencies.xml @ 2:14d6929f8aa1 draft default tip

Tool tests or/and test-data are missing.

2:14d6929f8aa1

<?xml version="1.0"?>
<tool_dependency>
    <package name="cutadapt" version="1.4.2">
        <install version="1.0">
            <actions>
                <action type="download_by_url">http://pypi.python.org/packages/source/c/cutadapt/cutadapt-1.4.2.tar.gz</action>
                <action type="shell_command">python setup.py install --home $INSTALL_DIR --install-scripts $INSTALL_DIR/bin</action>
                <action type="set_environment">
                    <environment_variable name="PYTHONPATH" action="append_to">$INSTALL_DIR/lib/python</environment_variable>
                    <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
                </action>
            </actions>
        </install>
        <readme>
        </readme>
    </package>
    <package name="bowtie2" version="2.1.0">
        <repository changeset_revision="606d435a57a4" name="package_bowtie2_2_1_0" owner="devteam" prior_installation_required="False" toolshed="http://testtoolshed.g2.bx.psu.edu" />
    </package>
    <package name="samtools" version="0.1.18">
	<repository changeset_revision="c0f72bdba484" name="package_samtools_0_1_18" owner="devteam" prior_installation_required="False" toolshed="http://testtoolshed.g2.bx.psu.edu" />
    </package>
</tool_dependency>