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annotate tool_dependencies.xml @ 2:14d6929f8aa1 draft default tip

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Tool tests or/and test-data are missing.
author nikos
date Thu, 11 Sep 2014 08:30:05 -0400
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14d6929f8aa1 Tool tests or/and test-data are missing.
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1 <?xml version="1.0"?>
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2 <tool_dependency>
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3 <package name="cutadapt" version="1.4.2">
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4 <install version="1.0">
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5 <actions>
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6 <action type="download_by_url">http://pypi.python.org/packages/source/c/cutadapt/cutadapt-1.4.2.tar.gz</action>
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7 <action type="shell_command">python setup.py install --home $INSTALL_DIR --install-scripts $INSTALL_DIR/bin</action>
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8 <action type="set_environment">
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9 <environment_variable name="PYTHONPATH" action="append_to">$INSTALL_DIR/lib/python</environment_variable>
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10 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
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11 </action>
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12 </actions>
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13 </install>
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14 <readme>
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15 </readme>
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16 </package>
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17 <package name="bowtie2" version="2.1.0">
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18 <repository changeset_revision="606d435a57a4" name="package_bowtie2_2_1_0" owner="devteam" prior_installation_required="False" toolshed="http://testtoolshed.g2.bx.psu.edu" />
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19 </package>
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20 <package name="samtools" version="0.1.18">
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21 <repository changeset_revision="c0f72bdba484" name="package_samtools_0_1_18" owner="devteam" prior_installation_required="False" toolshed="http://testtoolshed.g2.bx.psu.edu" />
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22 </package>
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23 </tool_dependency>