Mercurial > repos > nick > sequence_content_trimmer

changeset 2:a8fd651dcbd9 draft

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"planemo upload commit 9a5d91c35d21411a0733cd233ca588ff358aabd8-dirty"
author nick
date Fri, 27 May 2022 22:46:30 +0000
parents 7ef568cbf13b
children d8b86dc67f84
files trimmer.xml
diffstat 1 files changed, 2 insertions(+), 2 deletions(-) [+]
line wrap: on
line diff
--- a/trimmer.xml	Fri May 27 22:44:01 2022 +0000
+++ b/trimmer.xml	Fri May 27 22:46:30 2022 +0000
@@ -1,5 +1,5 @@
 <?xml version="1.0"?>
-<tool id="sequence_content_trimmer" version="0.2.1" name="Sequence Content Trimmer">
+<tool id="sequence_content_trimmer" version="0.2.2" name="Sequence Content Trimmer">
   <description>trim reads based on certain bases</description>
   <command detect_errors="exit_code"><![CDATA[
   #if $paired.is_paired and (('fasta' in $input1.extension and 'fastq' in $input2.extension) or \
@@ -17,7 +17,7 @@
     #else
       -f $input1.extension
     #end if
-    -b $bases -t $thres -w $win_len $invert
+    -b '$bases' -t $thres -w $win_len $invert
     #if $min_len.has_min_len:
       -m $min_len.value
     #end if