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changeset 9:f6f61b363467 draft

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planemo upload commit 022984f323d3da44f70b3bf79c684cfd8dda3f61-dirty
author nick
date Mon, 23 Nov 2015 19:14:28 -0500
parents e504cc1d5a76
children ffd06de5cea9
files align_families.xml duplex.xml
diffstat 2 files changed, 3 insertions(+), 3 deletions(-) [+]
line wrap: on
line diff
--- a/align_families.xml	Mon Nov 23 19:11:52 2015 -0500
+++ b/align_families.xml	Mon Nov 23 19:14:28 2015 -0500
@@ -6,7 +6,7 @@
     <requirement type="package" version="0.1">duplex</requirement>
     <requirement type="set_environment">DUPLEX_DIR</requirement>
   </requirements>
-  <command interpreter="python" detect_errors="exit_code">\$DUPLEX_DIR/align_families.py $input &gt; $output
+  <command detect_errors="exit_code">python \$DUPLEX_DIR/align_families.py $input &gt; $output
   </command>
   <inputs>
     <param name="input" type="data" format="tabular" label="Input reads" help="with barcodes, grouped by family"/>
--- a/duplex.xml	Mon Nov 23 19:11:52 2015 -0500
+++ b/duplex.xml	Mon Nov 23 19:14:28 2015 -0500
@@ -5,8 +5,8 @@
     <requirement type="package" version="0.1">duplex</requirement>
     <requirement type="set_environment">DUPLEX_DIR</requirement>
   </requirements>
-  <command interpreter="python" detect_errors="exit_code"><![CDATA[
-    \$DUPLEX_DIR/duplex.py -r $min_reads -q $qual_thres -F $qual_format $input
+  <command detect_errors="exit_code"><![CDATA[
+    python \$DUPLEX_DIR/duplex.py -r $min_reads -q $qual_thres -F $qual_format $input
     #if $keep_sscs:
       --sscs-file $sscs
     #end if