diff mafft/test/sample.parttree @ 18:e4d75f9efb90 draft

planemo upload commit b'4303231da9e48b2719b4429a29b72421d24310f4\n'-dirty

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/mafft/test/sample.parttree	Thu Feb 02 18:44:31 2017 -0500
@@ -0,0 +1,504 @@
+>     1== M63632   1 Lampetra japonica rhodopsin <>[BBRC174,1125-1132'91]
+MNG---------------------------------------------------------
+-TE--GDNFYVPF-----------------SNKTGLARSPYEYPQ---------Y-YLAE
+PWK---------YSALAAYMFFLILVGFPVNFLTLFVTVQHKKLRTPLNYILLNLAMANL
+FMVLFG-FTVTMYTS-MN-GYFV--FGPTMCSIEGFFATLGGEVALWSLVVLAIERYIVI
+CKPMGN-FRFGNTHAIMGVAFTWIMALAC-AAPPLVG-W-----SRYIPEGMQCSCGPDY
+YTLNPNFNNESYVVYMFVVHFLVPFVIIFFCYGRLLCTV----KE---------------
+------------------------------------------------------------
+-----------------------------------------------------------A
+AAAQQ---------------------------------ESASTQKAEKEVTRMVVLMVIG
+FLVCWVPYASVAFYIFT-HQGS--DFGATFMTLPAFFAKSSALYNPVIYILMNKQFRNCM
+ITTLC----C---GKNPLGD-DE--SGASTSKTEV-------------------------
+--------------------------------------------------------SSVS
+-------TSPVSP-A----------
+>     2== U22180   1 rat opsin <rod>[J.Mol.Neurosci.5(3),207-209'94]
+MNG---------------------------------------------------------
+-TE--GPNFYVPF-----------------SNITGVVRSPFEQPQ---------Y-YLAE
+PWQ---------FSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADL
+FMVFGG-FTTTLYTS-LH-GYFV--FGPTGCNLEGFFATLGGEIGLWSLVVLAIERYVVV
+CKPMSN-FRFGENHAIMGVAFTWVMALAC-AAPPLVG-W-----SRYIPEGMQCSCGIDY
+YTLKPEVNNESFVIYMFVVHFTIPMIVIFFCYGQLVFTV----KE---------------
+------------------------------------------------------------
+-----------------------------------------------------------A
+AAQQQ---------------------------------ESATTQKAEKEVTRMVIIMVIF
+FLICWLPYASVAMYIFT-HQGS--NFGPIFMTLPAFFAKTASIYNPIIYIMMNKQFRNCM
+LTSLC----C---GKNPLGD-DE--ASATASKTE--------------------------
+------------------------------------------------------------
+-------TSQVAP-A----------
+>     3== M92038   1 chicken green sensitive cone opsin <retina>[PNAS89,5932-5936'9
+MNG---------------------------------------------------------
+-TE--GINFYVPM-----------------SNKTGVVRSPFEYPQ---------Y-YLAE
+PWK---------YRLVCCYIFFLISTGLPINLLTLLVTFKHKKLRQPLNYILVNLAVADL
+FMACFG-FTVTFYTA-WN-GYFV--FGPVGCAVEGFFATLGGQVALWSLVVLAIERYIVV
+CKPMGN-FRFSATHAMMGIAFTWVMAFSC-AAPPLFG-W-----SRYMPEGMQCSCGPDY
+YTHNPDYHNESYVLYMFVIHFIIPVVVIFFSYGRLICKV----RE---------------
+------------------------------------------------------------
+-----------------------------------------------------------A
+AAQQQ---------------------------------ESATTQKAEKEVTRMVILMVLG
+FMLAWTPYAVVAFWIFT-NKGA--DFTATLMAVPAFFSKSSSLYNPIIYVLMNKQFRNCM
+ITTIC----C---GKNPFGD-EDVSSTVSQSKTEV-------------------------
+--------------------------------------------------------SSVS
+-------SSQVSP-A----------
+>     4=p A45229 opsin, green-sensitive (clone GFgr-1) - goldfish
+MNG---------------------------------------------------------
+-TE--GKNFYVPM-----------------SNRTGLVRSPFEYPQ---------Y-YLAE
+PWQ---------FKILALYLFFLMSMGLPINGLTLVVTAQHKKLRQPLNFILVNLAVAGT
+IMVCFG-FTVTFYTA-IN-GYFV--LGPTGCAVEGFMATLGGEVALWSLVVLAIERYIVV
+CKPMGS-FKFSSSHAFAGIAFTWVMALAC-AAPPLFG-W-----SRYIPEGMQCSCGPDY
+YTLNPDYNNESYVIYMFVCHFILPVAVIFFTYGRLVCTV----KA---------------
+------------------------------------------------------------
+-----------------------------------------------------------A
+AAQQQ---------------------------------DSASTQKAEREVTKMVILMVFG
+FLIAWTPYATVAAWIFF-NKGA--DFSAKFMAIPAFFSKSSALYNPVIYVLLNKQFRNCM
+LTTIF----C---GKNPLGD-DE-SSTVSTSKTEV-------------------------
+--------------------------------------------------------SS--
+----------VSP-A----------
+>     5=p B45229 opsin, green-sensitive (clone GFgr-2) - goldfish
+MNG---------------------------------------------------------
+-TE--GNNFYVPL-----------------SNRTGLVRSPFEYPQ---------Y-YLAE
+PWQ---------FKLLAVYMFFLICLGLPINGLTLICTAQHKKLRQPLNFILVNLAVAGA
+IMVCFG-FTVTFYTA-IN-GYFA--LGPTGCAVEGFMATLGGEVALWSLVVLAIERYIVV
+CKPMGS-FKFSSTHASAGIAFTWVMAMAC-AAPPLVG-W-----SRYIPEGIQCSCGPDY
+YTLNPEYNNESYVLYMFICHFILPVTIIFFTYGRLVCTV----KA---------------
+------------------------------------------------------------
+-----------------------------------------------------------A
+AAQQQ---------------------------------DSASTQKAEREVTKMVILMVLG
+FLVAWTPYATVAAWIFF-NKGA--AFSAQFMAIPAFFSKTSALYNPVIYVLLNKQFRSCM
+LTTLF----C---GKNPLGD-EE-SSTVSTSKTEV-------------------------
+--------------------------------------------------------SS--
+----------VSP-A----------
+>     6== L11864   1 Carassius auratus blue cone opsin <retina>[Biochemistry32,208-
+MKQ---------------------------------------------------------
+-VPEFHEDFYIPIPL-------------DINNLS--AYSPFLVPQ---------D-HLGN
+QGI---------FMAMSVFMFFIFIGGASINILTILCTIQFKKLRSHLNYILVNLSIANL
+FVAIFG-SPLSFYSF-FN-RYFI--FGATACKIEGFLATLGGMVGLWSLAVVAFERWLVI
+CKPLGN-FTFKTPHAIAGCILPWISALAA-SLPPLFG-W-----SRYIPEGLQCSCGPDW
+YTTNNKYNNESYVMFLFCFCFAVPFGTIVFCYGQLLITL----KL---------------
+------------------------------------------------------------
+-----------------------------------------------------------A
+AKAQA---------------------------------DSASTQKAEREVTKMVVVMVLG
+FLVCWAPYASFSLWIVS-HRGE--EFDLRMATIPSCLSKASTVYNPVIYVLMNKQFRSCM
+M-KMV----C---GKN-IEE-DE--ASTSSQVTQV-------------------------
+--------------------------------------------------------SS--
+----------VAPEK----------
+>     7== M13299   1 human BCP <>[Science232(4747),193-202'86]
+MRK---------------------------------------------------------
+-MS--EEEFYL------------------FKNISSV--GPWDGPQ---------Y-HIAP
+VWA---------FYLQAAFMGTVFLIGFPLNAMVLVATLRYKKLRQPLNYILVNVSFGGF
+LLCIFS-VFPVFVAS-CN-GYFV--FGRHVCALEGFLGTVAGLVTGWSLAFLAFERYIVI
+CKPFGN-FRFSSKHALTVVLATWTIGIGV-SIPPFFG-W-----SRFIPEGLQCSCGPDW
+YTVGTKYRSESYTWFLFIFCFIVPLSLICFSYTQLLRAL----KA---------------
+------------------------------------------------------------
+-----------------------------------------------------------V
+AAQQQ---------------------------------ESATTQKAEREVSRMVVVMVGS
+FCVCYVPYAAFAMYMVN-NRNH--GLDLRLVTIPSFFSKSACIYNPIIYCFMNKQFQACI
+M-KMV----C---GKA-MTD-ES--DTCSSQKTEV-------------------------
+--------------------------------------------------------STVS
+-------STQVGP-N----------
+>     8=opsin, greensensitive  human (fragment) S07060
+------------------------------------------------------------
+------------------------------------------------------------
+----------------------------------------------------------DL
+AETVIA-STISIVNQ-VS-GYFV--LGHPMCVLEGYTVSLCGITGLWSLAIISWERWLVV
+CKPFGN-VRFDAKLAIVGIAFSWIWAAVW-TAPPIFG-W-----SRYWPHGLKTSCGPDV
+FSGSSYPGVQSYMIVLMVTCCITPLSIIVLCYLQVWLAI----RA---------------
+------------------------------------------------------------
+-----------------------------------------------------------V
+AKQQK---------------------------------ESESTQKAEKEVTRMVVVMVLA
+FC----------------------------------------------------------
+------------------------------------------------------------
+------------------------------------------------------------
+-------------------------
+>     9== K03494   1 human GCP <>[Science232(4747),193-202'86]
+MAQQWSLQRLA---------------------------------------GRHPQDSYED
+STQ--SSIFTYTN-----------------SNST---RGPFEGPN---------Y-HIAP
+RWV---------YHLTSVWMIFVVIASVFTNGLVLAATMKFKKLRHPLNWILVNLAVADL
+AETVIA-STISVVNQ-VY-GYFV--LGHPMCVLEGYTVSLCGITGLWSLAIISWERWMVV
+CKPFGN-VRFDAKLAIVGIAFSWIWAAVW-TAPPIFG-W-----SRYWPHGLKTSCGPDV
+FSGSSYPGVQSYMIVLMVTCCITPLSIIVLCYLQVWLAI----RA---------------
+------------------------------------------------------------
+-----------------------------------------------------------V
+AKQQK---------------------------------ESESTQKAEKEVTRMVVVMVLA
+FCFCWGPYAFFACFAAA-NPGY--PFHPLMAALPAFFAKSATIYNPVIYVFMNRQFRNCI
+LQLF---------GKK-VDD-GS--ELSSASKTEV-------------------------
+--------------------------------------------------------SSV-
+--------SSVSP-A----------
+>    10== Z68193   1 human Red Opsin <>[]
+MAQQWSLQRLA---------------------------------------GRHPQDSYED
+STQ--SSIFTYTN-----------------SNST---RGPFEGPN---------Y-HIAP
+RWV---------YHLTSVWMIFVVTASVFTNGLVLAATMKFKKLRHPLNWILVNLAVADL
+AETVIA-STISIVNQ-VS-GYFV--LGHPMCVLEGYTVSLCGITGLWSLAIISWERWLVV
+CKPFGN-VRFDAKLAIVGIAFSWIWSAVW-TAPPIFG-W-----SRYWPHGLKTSCGPDV
+FSGSSYPGVQSYMIVLMVTCCIIPLAIIMLCYLQVWLAI----RA---------------
+------------------------------------------------------------
+-----------------------------------------------------------V
+AKQQK---------------------------------ESESTQKAEKEVTRMVVVMIFA
+YCVCWGPYTFFACFAAA-NPGY--AFHPLMAALPAYFAKSATIYNPVIYVFMNRQFRNCI
+LQLF---------GKK-VDD-GS--ELSSASKTEV-------------------------
+--------------------------------------------------------SSV-
+--------SSVSP-A----------
+>    11== M92036   1 Gecko gecko P521 <retina>[PNAS89,6841-6845'92]
+MTEAWNVAVFA---------------------------------------ARRSRDD-DD
+TTR--GSVFTYTN-----------------TNNT---RGPFEGPN---------Y-HIAP
+RWV---------YNLVSFFMIIVVIASCFTNGLVLVATAKFKKLRHPLNWILVNLAFVDL
+VETLVA-STISVFNQ-IF-GYFI--LGHPLCVIEGYVVSSCGITGLWSLAIISWERWFVV
+CKPFGN-IKFDSKLAIIGIVFSWVWAWGW-SAPPIFG-W-----SRYWPHGLKTSCGPDV
+FSGSVELGCQSFMLTLMITCCFLPLFIIIVCYLQVWMAI----RA---------------
+------------------------------------------------------------
+-----------------------------------------------------------V
+AAQQK---------------------------------ESESTQKAEREVSRMVVVMIVA
+FCICWGPYASFVSFAAA-NPGY--AFHPLAAALPAYFAKSATIYNPVIYVFMNRQFRNCI
+MQLF---------GKK-VDD-GS--EASTTSRTEV-------------------------
+--------------------------------------------------------SSVS
+-------NSSVAP-A----------
+>    12== M62903   1 chicken visual pigment <>[BBRC173,1212-1217'90]
+MAA-WEAAFAA---------------------------------------RRRHEE--ED
+TTR--DSVFTYTN-----------------SNNT---RGPFEGPN---------Y-HIAP
+RWV---------YNLTSVWMIFVVAASVFTNGLVLVATWKFKKLRHPLNWILVNLAVADL
+GETVIA-STISVINQ-IS-GYFI--LGHPMCVVEGYTVSACGITALWSLAIISWERWFVV
+CKPFGN-IKFDGKLAVAGILFSWLWSCAW-TAPPIFG-W-----SRYWPHGLKTSCGPDV
+FSGSSDPGVQSYMVVLMVTCCFFPLAIIILCYLQVWLAI----RA---------------
+------------------------------------------------------------
+-----------------------------------------------------------V
+AAQQK---------------------------------ESESTQKAEKEVSRMVVVMIVA
+YCFCWGPYTFFACFAAA-NPGY--AFHPLAAALPAYFAKSATIYNPIIYVFMNRQFRNCI
+LQLF---------GKK-VDD-GS--EVST-SRTEV-------------------------
+--------------------------------------------------------SSVS
+-------NSSVSP-A----------
+>    13== S75720   1 chicken P-opsin <>[Science267(5203),1502-1506'95]
+MS--------------------------------------------------------SN
+SSQ--AP-----------------------PNGT---PGPFDGPQ---------WPYQAP
+QST---------YVGVAVLMGTVVACASVVNGLVIVVSICYKKLRSPLNYILVNLAVADL
+LVTLCG-SSVSLSNN-IN-GFFV--FGRRMCELEGFMVSLTGIVGLWSLAILALERYVVV
+CKPLGD-FQFQRRHAVSGCAFTWGWALLW-SAPPLLG-W-----SSYVPEGLRTSCGPNW
+YTGGSNN--NSYILSLFVTCFVLPLSLILFSYTNLLLTL----RA---------------
+------------------------------------------------------------
+-----------------------------------------------------------A
+AAQQK---------------------------------EADTTQRAEREVTRMVIVMVMA
+FLLCWLPYSTFALVVAT-HKGI--IIQPVLASLPSYFSKTATVYNPIIYVFMNKQFQSCL
+LEMLC----CGYQPQR-TGK-AS--PGTPGPHADV-------------------------
+--------------------------------------------------------TAAG
+------LRNKVMP-AH-------PV
+>    14== M17718   1 D.melanogaster Rh3 <>[J.Neurosci.7,1550-1557'87]
+MESGNVS-----------------------------------------------SSLFGN
+VSTALRPEARLSA---ETRLL----GW----------NVPPEELR-----------HIPE
+HWLTYPEPPESMNYLLGTLYIFFTLMSMLGNGLVIWVFSAAKSLRTPSNILVINLAFCDF
+MMMVK--TPIFIYNS-FH-QGYA--LGHLGCQIFGIIGSYTGIAAGATNAFIAYDRFNVI
+TRPMEG--KMTHGKAIAMIIFIYMYATPW-VVACYTETW-----GRFVPEGYLTSCTFDY
+LT--DNFDTRLFVACIFFFSFVCPTTMITYYYSQIVGHVFSHEKA---------------
+------------------------------------------------------------
+-----------------------------------------------------------L
+RDQAKK--------------------MNVESL---RSNVDKNKETAEIRIAKAAITICFL
+FFCSWTPYGVMSLIGAF-GDKT--LLTPGATMIPACACKMVACIDPFVYAISHPRYRMEL
+QKRCP----WLALNEKAPE--SS-AVASTSTTQEP-------------------------
+------------------------------------------------------------
+--------QQTTA-A----------
+>    15== X65879   1 Drosophila pseudoobscura Dpse\Rh3 <>[Genetics132(1),193-204'92
+MEYHNVS-----------------------------------------------SVL-GN
+VSSVLRPDARLSA---ESRLL----GW----------NVPPDELR-----------HIPE
+HWLIYPEPPESMNYLLGTLYIFFTVISMIGNGLVMWVFSAAKSLRTPSNILVINLAFCDF
+MMMIK--TPIFIYNS-FH-QGYA--LGHLGCQIFGVIGSYTGIAAGATNAFIAYDRYNVI
+TRPMEG--KMTHGKAIAMIIFIYLYATPW-VVACYTESW-----GRFVPEGYLTSCTFDY
+LT--DNFDTRLFVACIFFFSFVCPTTMITYYYSQIVGHVFSHEKA---------------
+------------------------------------------------------------
+-----------------------------------------------------------L
+RDQAKK--------------------MNVDSL---RSNVDKSKEAAEIRIAKAAITICFL
+FFASWTPYGVMSLIGAF-GDKT--LLTPGATMIPACTCKMVACIDPFVYAISHPRYRMEL
+QKRCP----WLAISEKAPE--SR-AAISTSTTQEQ-------------------------
+------------------------------------------------------------
+--------QQTTA-A----------
+>    16== M17730   1 D.melanogaster Rh4 opsin <>[J.Neurosci.7,1558-1566'87]
+ME-----------------------------------------------------PLCNA
+SEPPLRPEAR-SSGNGDLQFL----GW----------NVPPDQIQ-----------YIPE
+HWLTQLEPPASMHYMLGVFYIFLFCASTVGNGMVIWIFSTSKSLRTPSNMFVLNLAVFDL
+IMCLK--APIF--NS-FH-RGFAIYLGNTWCQIFASIGSYSGIGAGMTNAAIGYDRYNVI
+TKPMNR--NMTFTKAVIMNIIIWLYCTPW-VVLPLTQFW-----DRFVPEGYLTSCSFDY
+LS--DNFDTRLFVGTIFFFSFVCPTLMILYYYSQIVGHVFSHEKA---------------
+------------------------------------------------------------
+-----------------------------------------------------------L
+REQAKK--------------------MNVESL---RSNVDKSKETAEIRIAKAAITICFL
+FFVSWTPYGVMSLIGAF-GDKS--LLTQGATMIPACTCKLVACIDPFVYAISHPRYRLEL
+QKRCP----WLGVNEKSGE--IS-SAQST-TTQEQ-------------------------
+------------------------------------------------------------
+--------QQTTA-A----------
+>    17== X65880   1 Drosophila pseudoobscura Dpse\Rh4 <>[Genetics132(1),193-204'92
+MD-----------------------------------------------------ALCNA
+SEPPLRPEARMSSGSDELQFL----GW----------NVPPDQIQ-----------YIPE
+HWLTQLEPPASMHYMLGVFYIFLFFASTLGNGMVIWIFSTSKSLRTPSNMFVLNLAVFDL
+IMCLK--APIFIYNS-FH-RGFA--LGNTWCQIFASIGSYSGIGAGMTNAAIGYDRYNVI
+TKPMNR--NMTFTKAVIMNIIIWLYCTPW-VVLPLTQFW-----DRFVPEGYLTSCSFDY
+LS--DNFDTRLFVGTIFLFSFVVPTLMILYYYSQIVGHVFNHEKA---------------
+------------------------------------------------------------
+-----------------------------------------------------------L
+REQAKK--------------------MNVESL---RSNVDKSKETAEIRIAKAAITICFL
+FFVSWTPYGVMSLIGAF-GDKS--LLTPGATMIPACTCKLVACIEPFVYAISHPRYRMEL
+QKRCP----WLGVNEKSGE--AS-SAQST-TTQEQ-------------------------
+------------------------------------------------------------
+-------TQQTSA-A----------
+>    18== D50584   1 Hemigrapsus sanguineus opsin BcRh2 <compound eye>[J.Exp.Biol.1
+MT----------------------------------------------------------
+--NATGPQMAYYGAASMD-FG-------YPEGVSIVDFVRPEIKP-----------YVHQ
+HWYNYPPVNPMWHYLLGVIYLFLGTVSIFGNGLVIYLFNKSAALRTPANILVVNLALSDL
+IMLTTN-VPFFTYNC-FSGGVWM--FSPQYCEIYACLGAITGVCSIWLLCMISFDRYNII
+CNGFNG-PKLTTGKAVVFALISWVIAIGC-ALPPFFG-W-----GNYILEGILDSCSYDY
+LT--QDFNTFSYNIFIFVFDYFLPAAIIVFSYVFIVKAIFAHEAA---------------
+------------------------------------------------------------
+-----------------------------------------------------------M
+RAQAKK--------------------MNVSTL---RS-NEADAQRAEIRIAKTALVNVSL
+WFICWTPYALISLKGVM-GDTS--GITPLVSTLPALLAKSCSCYNPFVYAISHPKYRLAI
+TQHLP----WFCVHETETKS-ND-DSQSNSTVAQ--------------------------
+------------------------------------------------------------
+-----------DK-A----------
+>    19== D50583   1 Hemigrapsus sanguineus opsin BcRh1 <compound eye>[J.Exp.Biol.1
+MA----------------------------------------------------------
+--NVTGPQMAFYGSGAAT-FG-------YPEGMTVADFVPDRVKH-----------MVLD
+HWYNYPPVNPMWHYLLGVVYLFLGVISIAGNGLVIYLYMKSQALKTPANMLIVNLALSDL
+IMLTTN-FPPFCYNC-FSGGRWM--FSGTYCEIYAALGAITGVCSIWTLCMISFDRYNII
+CNGFNG-PKLTQGKATFMCGLAWVISVGW-SLPPFFG-W-----GSYTLEGILDSCSYDY
+FT--RDMNTITYNICIFIFDFFLPASVIVFSYVFIVKAIFAHEAA---------------
+------------------------------------------------------------
+-----------------------------------------------------------M
+RAQAKK--------------------MNVTNL---RS-NEAETQRAEIRIAKTALVNVSL
+WFICWTPYAAITIQGLL-GNAE--GITPLLTTLPALLAKSCSCYNPFVYAISHPKFRLAI
+TQHLP----WFCVHEKDPND-VE-ENQSSNTQTQ--------------------------
+------------------------------------------------------------
+-----------EK-S----------
+>    20== K02320   1 D.melanogaster opsin <>[Cell40,851-858'85]
+ME------------------------------------------------------SFAV
+AAAQLGPHFAPLS------------------NGSVVDKVTPDMAH-----------LISP
+YWNQFPAMDPIWAKILTAYMIMIGMISWCGNGVVIYIFATTKSLRTPANLLVINLAISDF
+GIMITN-TPMMGINL-YF-ETWV--LGPMMCDIYAGLGSAFGCSSIWSMCMISLDRYQVI
+VKGMAG-RPMTIPLALGKM---------------------------YVPEGNLTSCGIDY
+LE--RDWNPRSYLIFYSIFVYYIPLFLICYSYWFIIAAVSAHEKA---------------
+------------------------------------------------------------
+-----------------------------------------------------------M
+REQAKK--------------------MNVKSL---RS-SEDAEKSAEGKLAKVALVTITL
+WFMAWTPYLVINCMGLF-KF-E--GLTPLNTIWGACFAKSAACYNPIVYGISHPKYRLAL
+KEKCP----CCVFGKVDDGK-SS-DAQSQATASEA-------------------------
+--------------------------------------------------------E---
+-----------SK-A----------
+>    21== K02315   1 D.melanogaster ninaE <>[Cell40,839-850'85]
+ME------------------------------------------------------SFAV
+AAAQLGPHFAPLS------------------NGSVVDKVTPDMAH-----------LISP
+YWNQFPAMDPIWAKILTAYMIMIGMISWCGNGVVIYIFATTKSLRTPANLLVINLAISDF
+GIMITN-TPMMGINL-YF-ETWV--LGPMMCDIYAGLGSAFGCSSIWSMCMISLDRYQVI
+VKGMAG-RPMTIPLALGKIAYIWFMSSIW-CLAPAFG-W-----SRYVPEGNLTSCGIDY
+LE--RDWNPRSYLIFYSIFVYYIPLFLICYSYWFIIAAVSAHEKA---------------
+------------------------------------------------------------
+-----------------------------------------------------------M
+REQAKK--------------------MNVKSL---RS-SEDAEKSAEGKLAKVALVTITL
+WFMAWTPYLVINCMGLF-KF-E--GLTPLNTIWGACFAKSAACYNPIVYGISHPKYRLAL
+KEKCP----CCVFGKVDDGK-SS-DAQSQATASEA-------------------------
+--------------------------------------------------------E---
+-----------SK-A----------
+>    22== X65877   1 Drosophila pseudoobscura Dpse\ninaE <>[Genetics132(1),193-204'
+MD------------------------------------------------------SFAA
+VATQLGPQFAAPS------------------NGSVVDKVTPDMAH-----------LISP
+YWDQFPAMDPIWAKILTAYMIIIGMISWCGNGVVIYIFATTKSLRTPANLLVINLAISDF
+GIMITN-TPMMGINL-YF-ETWV--LGPMMCDIYAGLGSAFGCSSIWSMCMISLDRYQVI
+VKGMAG-RPMTIPLALGKIAYIWFMSTIWCCLAPVFG-W-----SRYVPEGNLTSCGIDY
+LE--RDWNPRSYLIFYSIFVYYIPLFLICYSYWFIIAAVSAHEKA---------------
+------------------------------------------------------------
+-----------------------------------------------------------M
+REQAKK--------------------MNVKSL---RS-SEDADKSAEGKLAKVALVTISL
+WFMAWTPYLVINCMGLF-KF-E--GLTPLNTIWGACFAKSAACYNPIVYGISHPKYRLAL
+KEKCP----CCVFGKVDDGK-SS-EAQSQATTSEA-------------------------
+--------------------------------------------------------E---
+-----------SK-A----------
+>    23== M12896   1 D.melanogaster Rh2 <>[Cell44,705-710'86]
+MERSHL-------------------------------------------------PETPF
+DLAHSGPRFQAQSSG----------------NGSVLDNVLPDMAH-----------LVNP
+YWSRFAPMDPMMSKILGLFTLAIMIISCCGNGVVVYIFGGTKSLRTPANLLVLNLAFSDF
+CMMASQ-SPVMIINF-YY-ETWV--LGPLWCDIYAGCGSLFGCVSIWSMCMIAFDRYNVI
+VKGING-TPMTIKTSIMKILFIWMMAVFW-TVMPLIG-W-----SAYVPEGNLTACSIDY
+MT--RMWNPRSYLITYSLFVYYTPLFLICYSYWFIIAAVAAHEKA---------------
+------------------------------------------------------------
+-----------------------------------------------------------M
+REQAKK--------------------MNVKSL---RS-SEDCDKSAEGKLAKVALTTISL
+WFMAWTPYLVICYFGLF-KI-D--GLTPLTTIWGATFAKTSAVYNPIVYGISHPKYRIVL
+KEKCP----MCVFGNTDEPKPDA-PASDTETTSEA-------------------------
+--------------------------------------------------------D---
+-----------SK-A----------
+>    24== X65878   1 Drosophila pseudoobscura Dpse\Rh2 <>[Genetics132(1),193-204'92
+MERSLL-------------------------------------------------PEPPL
+AMALLGPRFEAQTGG----------------NRSVLDNVLPDMAP-----------LVNP
+HWSRFAPMDPTMSKILGLFTLVILIISCCGNGVVVYIFGGTKSLRTPANLLVLNLAFSDF
+CMMASQ-SPVMIINF-YY-ETWV--LGPLWCDIYAACGSLFGCVSIWSMCMIAFDRYNVI
+VKGING-TPMTIKTSIMKIAFIWMMAVFW-TIMPLIG-W-----SSYVPEGNLTACSIDY
+MT--RQWNPRSYLITYSLFVYYTPLFMICYSYWFIIATVAAHEKA---------------
+------------------------------------------------------------
+-----------------------------------------------------------M
+RDQAKK--------------------MNVKSL---RS-SEDCDKSAENKLAKVALTTISL
+WFMAWTPYLIICYFGLF-KI-D--GLTPLTTIWGATFAKTSAVYNPIVYGISHPNDRLVL
+KEKCP----MCVCGTTDEPKPDA-PPSDTETTSEA-------------------------
+--------------------------------------------------------E---
+-----------SK-D----------
+>    25== U26026   1 Apis mellifera long-wavelength rhodopsin <>[]
+MI----------------------------------------------------------
+--AVSGPSYEAFSYGGQARF----------NNQTVVDKVPPDMLH-----------LIDA
+NWYQYPPLNPMWHGILGFVIGMLGFVSAMGNGMVVYIFLSTKSLRTPSNLFVINLAISNF
+LMMFCM-SPPMVINC-YY-ETWV--LGPLFCQIYAMLGSLFGCGSIWTMTMIAFDRYNVI
+VKGLSG-KPLSINGALIRIIAIWLFSLGW-TIAPMFG-W-----NRYVPEGNMTACGTDY
+FN--RGLLSASYLVCYGIWVYFVPLFLIIYSYWFIIQAVAAHEKN---------------
+------------------------------------------------------------
+-----------------------------------------------------------M
+REQAKK--------------------MNVASL---RS-SENQNTSAECKLAKVALMTISL
+WFMAWTPYLVINFSGIF-NL-V--KISPLFTIWGSLFAKANAVYNPIVYGISHPKYRAAL
+FAKFP----SLAC-AAEPSS-DA-VSTTSGTTTVT-------------------------
+--------------------------------------------------------DNEK
+-----------SN-A----------
+>    26== L03781   1 Limulus polyphemus opsin <>[PNAS90,6150-6154'93]
+M-----------------------------------------------------------
+---ANQLSYSSLGWPYQP-------------NASVVDTMPKEMLY-----------MIHE
+HWYAFPPMNPLWYSILGVAMIILGIICVLGNGMVIYLMMTTKSLRTPTNLLVVNLAFSDF
+CMMAFM-MPTMTSNC-FA-ETWI--LGPFMCEVYGMAGSLFGCASIWSMVMITLDRYNVI
+VRGMAA-APLTHKKATLLLLFVWIWSGGW-TILPFFG-W-----SRYVPEGNLTSCTVDY
+LT--KDWSSASYVVIYGLAVYFLPLITMIYCYFFIVHAVAEHEKQ---------------
+------------------------------------------------------------
+-----------------------------------------------------------L
+REQAKK--------------------MNVASL---RANADQQKQSAECRLAKVAMMTVGL
+WFMAWTPYLIISWAGVF-SSGT--RLTPLATIWGSVFAKANSCYNPIVYGISHPRYKAAL
+YQRFP----SLACGSGESGS-DV-KSEASATTTME-------------------------
+--------------------------------------------------------EKPK
+----------IPE-A----------
+>    27== X07797   1 Octopus dofleini rhodopsin <>[FEBS232(1),69-72'88]
+MVES--------------------------------------------------------
+-------------------TTLVNQTWWY--NPTVD---------------------IHP
+HWAKFDPIPDAVYYSVGIFIGVVGIIGILGNGVVIYLFSKTKSLQTPANMFIINLAMSDL
+SFSAINGFPLKTISA-FM-KKWI--FGKVACQLYGLLGGIFGFMSINTMAMISIDRYNVI
+GRPMAASKKMSHRRAFLMIIFVWMWSIVW-SVGPVFN-W-----GAYVPEGILTSCSFDY
+LS--TDPSTRSFILCMYFCGFMLPIIIIAFCYFNIVMSVSNHEKE---------------
+------------------------------------------------------------
+-----------------------------------------------------------M
+AAMAKR--------------------LNAKEL---R--KAQAGASAEMKLAKISMVIITQ
+FMLSWSPYAIIALLAQF-GPAE--WVTPYAAELPVLFAKASAIHNPIVYSVSHPKFREAI
+QTTFPWLLTCCQFDEKECED-AN-DAEEEVVASER--GGESRDAAQMKEMMAMMQKMQAQ
+QAAYQPPPPPQGY--PPQGYPPQGAYPPPQGYPPQGYPPQGYPPQGYPPQGAPPQVEAPQ
+GAPPQGVDNQAYQ-A----------
+>    28== X70498   1 Todarodes pacificus rhodopsin <retina>[FEBS317(1-2),5-11'93]
+MGRD--------------------------------------------------------
+-------------------LR-DNETWWY--NPSIV---------------------VHP
+HWREFDQVPDAVYYSLGIFIGICGIIGCGGNGIVIYLFTKTKSLQTPANMFIINLAFSDF
+TFSLVNGFPLMTISC-FL-KKWI--FGFAACKVYGFIGGIFGFMSIMTMAMISIDRYNVI
+GRPMAASKKMSHRRAFIMIIFVWLWSVLW-AIGPIFG-W-----GAYTLEGVLCNCSFDY
+IS--RDSTTRSNILCMFILGFFGPILIIFFCYFNIVMSVSNHEKE---------------
+------------------------------------------------------------
+-----------------------------------------------------------M
+AAMAKR--------------------LNAKEL---R--KAQAGANAEMRLAKISIVIVSQ
+FLLSWSPYAVVALLAQF-GPLE--WVTPYAAQLPVMFAKASAIHNPMIYSVSHPKFREAI
+SQTFPWVLTCCQFDDKETED-DK-DAETEIPAGESSDAAPSADAAQMKEMMAMMQKMQQQ
+QAAY----PPQGYAPPPQGYPPQGY--PPQGYPPQGYPPQGYPP---PPQGAPPQ-GAPP
+AAPPQGVDNQAYQ-A----------
+>    29== L21195   1 human serotonin 5-HT7 receptor protein <placenta and fetal bra
+MMDVNSSGRPDLY----GHLRSFLLP--EVGRGLPDLSPDGGADPVAGSWAPHLLS---E
+VTASPAPTW----------------------------DAPPDNAS--GCGEQINY-----
+--------GRVEKVVIGSILTLITLLTIAGNCLVVISVCFVKKLRQPSNYLIVSLALADL
+SVAVAV-MPFVSVTDLIG-GKWI--FGHFFCNVFIAMDVMCCTASIMTLCVISIDRYLGI
+TRPLTYPVRQNGKCMAKMILSVWLLSASI-TLPPLFG-W-----AQNVNDDK--VCLIS-
+-------QDFGYTIYSTAVAFYIPMSVMLFMYYQIYKAARKSAAKHKF------------
+-----PGF---------------------------------PRVEPDSVI----------
+------------ALNGIVK----------------------LQKEVEECAN--------L
+SRLLKH-----------------------------ER-KNISIFKREQKAATTLGIIVGA
+FTVCWLPFFLLSTARPFICGTSCSCIPLWVERTFLWLGYANSLINPFIYAFFNRDLRTTY
+RSLLQ--------CQYRNIN----RKLSAAGMHEA-------------------LKLA--
+--------------------------------------------------------ERPE
+------RPEFVLQNADYCRKKGHDS
+>    30== L15228   1 rat 5HT-7 serotonin receptor <>[JBC268,18200-18204'93]
+M--------------------------------------------------PHLLSGFLE
+VTASPAPTW----------------------------DAPPDNVS--GCGEQINY-----
+--------GRVEKVVIGSILTLITLLTIAGNCLVVISVSFVKKLRQPSNYLIVSLALADL
+SVAVAV-MPFVSVTDLIG-GKWI--FGHFFCNVFIAMDVMCCTASIMTLCVISIDRYLGI
+TRPLTYPVRQNGKCMAKMILSVWLLSASI-TLPPLFG-W-----AQNVNDDK--VCLIS-
+-------QDFGYTIYSTAVAFYIPMSVMLFMYYQIYKAARKSAAKHKF------------
+-----PGF---------------------------------PRVQPESVI----------
+------------SLNGVVK----------------------LQKEVEECAN--------L
+SRLLKH-----------------------------ER-KNISIFKREQKAATTLGIIVGA
+FTVCWLPFFLLSTARPFICGTSCSCIPLWVERTCLWLGYANSLINPFIYAFFNRDLRPTS
+RSLLQ--------CQYRNIN----RKLSAAGMHEA-------------------LKLA--
+--------------------------------------------------------ERPE
+------RSEFVLQNSDHCGKKGHDT
+>    31=p A47425 serotonin receptor 5HT-7 - rat
+M--------------------------------------------------PHLLSGFLE
+VTASPAPTW----------------------------DAPPDNVS--GCGEQINY-----
+--------GRVEKVVIGSILTLITLLTIAGNCLVVISVSFVKKLRQPSNYLIVSLALADL
+SVAVAV-MPFVSVTDLIG-GKWI--FGHFFCNVFIAMDVMCCTASIMTLCVISIDRYLGI
+TRPLTYPVRQNGKCMAKMILSVWLLSASI-TLPPLFG-W-----AQNVNDDK--VCLIS-
+-------QDFGYTIYSTAVAFYIPMSVMLFMYYQIYKAARKSAAKHKF------------
+-----PGF---------------------------------PRVQPESVI----------
+------------SLNGVVK----------------------LQKEVEECAN--------L
+SRLLKH-----------------------------ER-KNISIFKREQKAATTLGIIVGA
+FTVCWLPFFLLSTARPFICGTSCSCIPLWVERTCLWLGYANSLINPFIYAFFNRDLRTTY
+RSLLQ--------CQYRNIN----RKLSAAGMHEA-------------------LKLA--
+--------------------------------------------------------ERPE
+------RSEFVLQNSDHCGKKGHDT
+>    32== M83181   1 human serotonin receptor <>[JBC267(11),7553-7562'92]
+M-DVLSPGQ--------GNNTTSPPAPFETGGNTTGI-----------------------
+--SDVTVSY---------------------------------------------------
+------------QVITSLLLGTLIFCAVLGNACVVAAIALERSLQNVANYLIGSLAVTDL
+MVSVLV-LPMAALYQ-VL-NKWT--LGQVTCDLFIALDVLCCTSSILHLCAIALDRYWAI
+TDPIDYVNKRTPRRAAALISLTWLIGFLI-SIPPMLG-WRTP--EDRSDPD---ACTIS-
+-------KDHGYTIYSTFGAFYIPLLLMLVLYGRIFRAARFRIRK---------------
+------------------------TVKKVEKTGADTRHGASPAPQPKKSVNGESGSRNWR
+LGVESKAGGAL-CANGAVRQGDDGAALEVIEVHRVGNSKEHLPLPSEAGPTPCAP-----
+ASFERK-----------NERNA-------------EA-KRKMALARERKTVKTLGIIMGT
+FILCWLPFFIVALVLPF-CESSC-HMPTLLGAIINWLGYSNSLLNPVIYAYFNKDFQNAF
+KKIIK--------CKFCR------------------------------------------
+------------------------------------------------------------
+------------------------Q
+>    33=p A35181 serotonin receptor class 1A - rat
+M-DVFSFGQ--------GNNTTASQEPFGTGGNVTSI-----------------------
+--SDVTFSY---------------------------------------------------
+------------QVITSLLLGTLIFCAVLGNACVVAAIALERSLQNVANYLIGSLAVTDL
+MVSVLV-LPMAALYQ-VL-NKWT--LGQVTCDLFIALDVLCCTSSILHLCAIALDRYWAI
+TDPIDYVNKRTPRRAAALISLTWLIGFLI-SIPPMLG-WRTP--EDRSDPD---ACTIS-
+-------KDHGYTIYSTFGAFYIPLLLMLVLYGRIFRAARFRIRK---------------
+------------------------TVRKVEKKGAGTSLGTSSAPPPKKSLNGQPGSGDWR
+RCAENRAVGTP-CTNGAVRQGDDEATLEVIEVHRVGNSKEHLPLPSESGSNSYAP-----
+ACLERK-----------NERNA-------------EA-KRKMALARERKTVKTLGIIMGT
+FILCWLPFFIVALVLPF-CESSC-HMPALLGAIINWLGYSNSLLNPVIYAYFNKDFQNAF
+KKIIK--------CKFCR------------------------------------------
+------------------------------------------------------------
+------------------------R
+>    34== L06803   1 Lymnaea stagnalis serotonin receptor <>[PNAS90,11-15'93]
+M-ANFTFGDLALDVARMGGLASTPSGLRSTGLTTPGLSPTG------------------L
+VTSDFNDSYGLTG-----QFINGSHSSRSRDNASAN-DTSATNMTDDRYWSLTVY-----
+--------SHEHLVLTSVILGLFVLCCIIGNCFVIAAVMLERSLHNVANYLILSLAVADL
+MVAVLV-MPLSVVSE-IS-KVWF--LHSEVCDMWISVDVLCCTASILHLVAIAMDRYWAV
+TS-IDYIRRRSARRILLMIMVVWIVALFI-SIPPLFG-WRDP--NN--DPDKTGTCIIS-
+-------QDKGYTIFSTVGAFYLPMLVMMIIYIRIWLVARSRIRKDKFQMTKARLKTEET
+TLVASPKTEYSVVSDCNGCNSPDSTTEKKKRRAPFKSYGCSPRPERKK------------
+----NRAKKLPENANGVNSNSSSSERLKQIQIE-----------TAEAFANGCAEEAS-I
+AMLERQ-CNNGKKISSNDTPYS-------------RT-REKLELKRERKAARTLAIITGA
+FLICWLPFFIIALIGPF-VDPE--GIPPFARSFVLWLGYFNSLLNPIIYTIFSPEFRSAF
+QKILF--------GKYRRG-----------------------------------------
+------------------------------------------------------------
+-----------------------HR
+>    35=p A47174 serotonin receptor, 5HTlym receptor - great pond snail
+M-ANFTFGDLALDVARMGGLASTPSGLRSTGLTTPGLSPTG------------------L
+VTSDFNDSYGLTG-----QFINGSHSSRSRDNASAN-DTSATNMTDDRYWSLTVY-----
+--------SHEHLVLTSVILGLFVLCCIIGNCFVIAAVMLERSLHNVANYLILSLAVADL
+MVAVLV-MPLSVVSE-IS-KVWF--LHSEVCDMWISVDVLCCTASILHLVAIAMDRYWAV
+TS-IDYIRRRSARRILLMIMVVWIVALFI-SIPPLFG-WRDP--NN--DPDKTGTCIIS-
+-------QDKGYTIFSTVGAFYLPMLVMMIIYIRIWLVARSRIRKDKFQMTKARLKTEET
+TLVASPKTEYSVVSDCNGCNSPDSTTEKKKRRAPFKSYGCSPRPERKK------------
+----NRAKKLPENANGVNSNSSSSERLKQIQIE-----------TAEAFANGCAEEAS-I
+AMLERQ-CNNGKKISSNDTPYS-------------RT-REKLELKRERKAARTLAIITGA
+FLICWLPFFIIALIGPF-VDPE--GIPPFARSFVLWLGYFNSLLNPIIYTIFSPEFRSAF
+QKILF--------GKYRRG-----------------------------------------
+------------------------------------------------------------
+-----------------------HR
+>    36== X95604   1 Bombyx mori serotonin receptor <antennae>[InsectBiochem.Mol.Bi
+M-EGAE-GQEELD----WEALYLRLPLQNCSWNSTGWEPNW------------------N
+VTVVPNTTW---------------------WQASAPFDTPAALVR---------------
+------------AAAKAVVLGLLILATVVGNVFVIAAILLERHLRSAANNLILSLAVADL
+LVACLV-MPLGAVYE-VV-QRWT--LGPELCDMWTSGDVLCCTASILHLVAIALDRYWAV
+TN-IDYIHASTAKRVGMMIACVWTVSFFV-CIAQLLG-WKDPDWNQRVSEDL--RCVVS-
+-------QDVGYQIFATASSFYVPVLIILILYWRIYQTARKRIRR---------------
+------------------------------RRGATARGGVGPPPVP--------------
+-------------AGGALVAGGGSGGIAAAVVAVIGRP---LPTISETTTTGFTNVSSNN
+TSPEKQSCANGLEADPPTTGYGAVAAAYYPSLVRRKP-KEAADSKRERKAAKTLAIITGA
+FVACWLPFFVLAILVPT-CDCE---VSPVLTSLSLWLGYFNSTLNPVIYTVFSPEFRHAF
+QRLLC--------GRRVRRR----R-----------------------------------
+------------------------------------------------------------
+----------------------APQ