Mercurial > repos > nick > duplex

diff make_families.xml @ 28:71b765a4c494 draft default tip

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planemo upload for repository https://github.com/galaxyproject/dunovo commit b'53eba8ce731a5f8afd739f9b9c01229b54880e6c\n'-dirty
author nick
date Sat, 18 Feb 2017 04:56:38 -0500
parents f33b89fe9f82
children
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--- a/make_families.xml	Sat Feb 18 04:10:19 2017 -0500
+++ b/make_families.xml	Sat Feb 18 04:56:38 2017 -0500
@@ -2,10 +2,10 @@
 <tool id="make_families" name="Du Novo: Make families" version="0.6">
   <description>of duplex sequencing reads</description>
   <requirements>
-    <requirement type="package" version="0.6.1">duplex</requirement>
+    <requirement type="package" version="0.6.2">duplex</requirement>
   </requirements>
   <!-- TODO: Add dependency on coreutils to get paste? -->
-  <command detect_errors="exit_code">make-families.sh -v TAG_LEN=$taglen -v INVARIANT=$invariant '$fastq1' '$fastq2' &gt; '$output'
+  <command detect_errors="exit_code">make-families.sh -t $taglen -i $invariant '$fastq1' '$fastq2' &gt; '$output'
   </command>
   <inputs>
     <param name="fastq1" type="data" format="fastq" label="Sequencing reads, mate 1"/>