comparison make_families.xml @ 28:71b765a4c494 draft default tip

planemo upload for repository https://github.com/galaxyproject/dunovo commit b'53eba8ce731a5f8afd739f9b9c01229b54880e6c\n'-dirty

27:f33b89fe9f82

<?xml version="1.0"?>
<tool id="make_families" name="Du Novo: Make families" version="0.6">
  <description>of duplex sequencing reads</description>
  <requirements>
    <requirement type="package" version="0.6.1">duplex</requirement>
  </requirements>
  <!-- TODO: Add dependency on coreutils to get paste? -->
  <command detect_errors="exit_code">make-families.sh -v TAG_LEN=$taglen -v INVARIANT=$invariant '$fastq1' '$fastq2' &gt; '$output'
  </command>
  <inputs>
    <param name="fastq1" type="data" format="fastq" label="Sequencing reads, mate 1"/>
    <param name="fastq2" type="data" format="fastq" label="Sequencing reads, mate 2"/>
    <param name="taglen" type="integer" value="12" min="0" label="Tag length" help="length of each random barcode on the ends of the fragments"/>

28:71b765a4c494

<?xml version="1.0"?>
<tool id="make_families" name="Du Novo: Make families" version="0.6">
  <description>of duplex sequencing reads</description>
  <requirements>
    <requirement type="package" version="0.6.2">duplex</requirement>
  </requirements>
  <!-- TODO: Add dependency on coreutils to get paste? -->
  <command detect_errors="exit_code">make-families.sh -t $taglen -i $invariant '$fastq1' '$fastq2' &gt; '$output'
  </command>
  <inputs>
    <param name="fastq1" type="data" format="fastq" label="Sequencing reads, mate 1"/>
    <param name="fastq2" type="data" format="fastq" label="Sequencing reads, mate 2"/>
    <param name="taglen" type="integer" value="12" min="0" label="Tag length" help="length of each random barcode on the ends of the fragments"/>