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comparison make_families.xml @ 2:71ace43428ca draft

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planemo upload commit 801bf168032a13f6405518bddb35a24c9e9a8cd4-dirty
author nick
date Mon, 23 Nov 2015 17:57:34 -0500
parents 9bafe0c4bfa0
children 13bcc2f459b0
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1:9bafe0c4bfa0 2:71ace43428ca
1 <?xml version="1.0"?> 1 <?xml version="1.0"?>
2 <tool id="make_families" name="Make families" version="0.1"> 2 <tool id="make_families" name="Make families" version="0.1">
3 <description>from duplex sequencing data</description> 3 <description>from duplex sequencing data</description>
4 <command>paste $fastq1 $fastq2 4 <command>paste $fastq1 $fastq2
5 | paste - - - - 5 | paste - - - -
6 | awk -f $DUPLEX_DIR/make-barcodes.awk -v TAG_LEN=$taglen -v INVARIANT=$invariant 6 | awk -f \$DUPLEX_DIR/make-barcodes.awk -v TAG_LEN=$taglen -v INVARIANT=$invariant
7 | sort 7 | sort
8 &gt; $output 8 &gt; $output
9 </command> 9 </command>
10 <inputs> 10 <inputs>
11 <param name="fastq1" type="data" format="fastq" label="Sequencing reads, mate 1"/> 11 <param name="fastq1" type="data" format="fastq" label="Sequencing reads, mate 1"/>