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annotate mafft/core/makemergetable.rb @ 18:e4d75f9efb90 draft

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planemo upload commit b'4303231da9e48b2719b4429a29b72421d24310f4\n'-dirty
author nick
date Thu, 02 Feb 2017 18:44:31 -0500
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Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
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1 #!/bin/env ruby
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2 require 'getopts'
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3
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4 seedoffset = 0
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5
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6 if getopts( "s:" ) == nil || ARGV.length == 0 || $OPT_h then
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7 puts "Usage: #{$0} [-s number_of_seeds] input_files"
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8 exit
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9 end
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11 if $OPT_s
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12 seedoffset = $OPT_s.to_i
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13 end
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16 files = ARGV
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17
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19 num = seedoffset + 1
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20 for file in files
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21 output = ""
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22 STDERR.puts file
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23 fp = File.open( file, "r" )
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24 while line = fp.gets
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25 if line =~ /^>/ then
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26 output += " " + num.to_s
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27 num += 1
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28 end
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29 end
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30 fp.close
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31 puts output + " # " + file
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32 end