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annotate mafft/core/countlen.c @ 18:e4d75f9efb90 draft

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author nick
date Thu, 02 Feb 2017 18:44:31 -0500
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18
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1 #include "mltaln.h"
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2
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3 #define DEBUG 0
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4
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5 void arguments( int argc, char *argv[] )
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6 {
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7 int c;
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8
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9 while( --argc > 0 && (*++argv)[0] == '-' )
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10 {
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11 while ( (c = *++argv[0]) )
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12 {
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13 switch( c )
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14 {
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15 case 'i':
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16 inputfile = *++argv;
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17 fprintf( stderr, "inputfile = %s\n", inputfile );
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18 --argc;
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19 goto nextoption;
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20 default:
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21 fprintf( stderr, "illegal option %c\n", c );
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22 argc = 0;
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23 break;
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24 }
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25 }
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26 nextoption:
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27 ;
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28 }
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29 if( argc != 0 )
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30 {
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31 fprintf( stderr, "options: Check source file !\n" );
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32 exit( 1 );
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33 }
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34 }
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35
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36
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37 int main( int argc, char *argv[] )
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38 {
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39 FILE *infp;
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40 int nlenmin;
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41
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42 arguments( argc, argv );
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43
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44 if( inputfile )
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45 {
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46 infp = fopen( inputfile, "r" );
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47 if( !infp )
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48 {
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49 fprintf( stderr, "Cannot open %s\n", inputfile );
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50 exit( 1 );
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51 }
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52 }
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53 else
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54 infp = stdin;
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55
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56 dorp = NOTSPECIFIED;
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57 getnumlen_nogap( infp, &nlenmin );
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58
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59 fprintf( stdout, "%d x %d - %d %c\n", njob, nlenmax, nlenmin, dorp );
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60 return( 0 );
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61 }