Mercurial > repos > nick > dunovo
changeset 22:e875e5572808 draft
planemo upload for repository https://github.com/galaxyproject/dunovo commit b'fd1625359a101d8a6b0b8d97028cc8be509398f2\n'-dirty
author | nick |
---|---|
date | Fri, 05 Jan 2018 00:50:23 -0500 |
parents | f509cd1d5a78 |
children | 04a9c9e8c8c3 |
files | tool_dependencies.xml |
diffstat | 1 files changed, 14 insertions(+), 6 deletions(-) [+] |
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--- a/tool_dependencies.xml Thu Jan 04 23:55:06 2018 -0500 +++ b/tool_dependencies.xml Fri Jan 05 00:50:23 2018 -0500 @@ -14,37 +14,45 @@ <actions> <!-- download the main dunovo package files --> <action sha256sum="81ef826b54746f4335f400b0ec5580bf04b5edfd8051682a684717fb32246227" type="download_by_url">https://github.com/galaxyproject/dunovo/archive/v2.0.10.tar.gz</action> + <action type="shell_command">rmdir kalign utillib ET</action> <!-- download the utillib submodule --> <action type="download_file">https://github.com/NickSto/utillib/archive/v0.1.0.tar.gz</action> <action type="shell_command">tar -zxvpf v0.1.0.tar.gz</action> <action type="shell_command">rm v0.1.0.tar.gz</action> - <action type="move_file"> + <action type="shell_command">ls -lFhAb > /home/me/tmp/galaxy/install.root1.log</action> + <action type="shell_command">ls -lFhAb utillib-0.1.0 > /home/me/tmp/galaxy/install.utillib1.log</action> + <action rename_to="utillib" type="move_file"> <source>utillib-0.1.0</source> - <destination>utillib</destination> + <destination>.</destination> </action> + <action type="shell_command">ls -lFhAb > /home/me/tmp/galaxy/install.root2.log</action> + <action type="shell_command">ls -lFhAb utillib-0.1.0 > /home/me/tmp/galaxy/install.utillib2.log</action> + <action type="shell_command">ls -lFhAb utillib > /home/me/tmp/galaxy/install.utillib3.log</action> <!-- download the kalign submodule --> <action type="download_file">https://github.com/makrutenko/kalign-dunovo/archive/v0.2.0.tar.gz</action> <action type="shell_command">tar -zxvpf v0.2.0.tar.gz</action> <action type="shell_command">rm v0.2.0.tar.gz</action> - <action type="move_file"> + <action rename_to="kalign" type="move_file"> <source>kalign-dunovo-0.2.0</source> - <destination>kalign</destination> + <destination>.</destination> </action> <!-- download the ET submodule --> <action type="download_file">https://github.com/NickSto/ET/archive/v0.2.2.tar.gz</action> <action type="shell_command">tar -zxvpf v0.2.2.tar.gz</action> <action type="shell_command">rm v0.2.2.tar.gz</action> - <action type="move_file"> + <action rename_to="ET" type="move_file"> <source>ET-0.2.2</source> - <destination>ET</destination> + <destination>.</destination> </action> <!-- make and install --> <action type="shell_command">make clean</action> <action type="shell_command">make</action> + <action type="shell_command">ls -lFhAb > /home/me/tmp/galaxy/install.root4.log</action> <action type="move_directory_files"> <source_directory>.</source_directory> <destination_directory>$INSTALL_DIR</destination_directory> </action> + <action type="shell_command">ls -lFhAb $INSTALL_DIR > /home/me/tmp/galaxy/install.install_dir1.log</action> <action type="set_environment"> <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR</environment_variable> </action>