Mercurial > repos > nick > dunovo
changeset 24:4f1eb9bd336d draft
planemo upload for repository https://github.com/galaxyproject/dunovo commit b'fd1625359a101d8a6b0b8d97028cc8be509398f2\n'-dirty
author | nick |
---|---|
date | Fri, 05 Jan 2018 03:28:07 -0500 |
parents | 04a9c9e8c8c3 |
children | 78b1544fba8c |
files | tool_dependencies.xml |
diffstat | 1 files changed, 6 insertions(+), 4 deletions(-) [+] |
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--- a/tool_dependencies.xml Fri Jan 05 03:12:52 2018 -0500 +++ b/tool_dependencies.xml Fri Jan 05 03:28:07 2018 -0500 @@ -19,15 +19,17 @@ <action type="download_file">https://github.com/NickSto/utillib/archive/v0.1.0.tar.gz</action> <action type="shell_command">tar -zxvpf v0.1.0.tar.gz</action> <action type="shell_command">rm v0.1.0.tar.gz</action> + <action type="shell_command">echo DEBUG $TMP_WORK_DIR</action> + <action type="shell_command">pwd</action> <action type="shell_command">ls -lFhAb > /home/me/tmp/galaxy/install.ls1.log</action> <action type="shell_command">ls -lFhAb utillib-0.1.0 > /home/me/tmp/galaxy/install.ls2.log</action> - <action type="shell_command">echo DEBUG $TMP_WORK_DIR</action> <action rename_to="utillib" type="move_file"> <source>utillib-0.1.0</source> <destination>$TMP_WORK_DIR</destination> </action> <action type="shell_command">ls -lFhAb > /home/me/tmp/galaxy/install.ls3.log</action> - <action type="shell_command">ls -lFhAb utillib > /home/me/tmp/galaxy/install.ls4.log</action> + <action type="shell_command">ls -lFhAb $TMP_WORK_DIR > /home/me/tmp/galaxy/install.ls4.log</action> + <action type="shell_command">ls -lFhAb utillib > /home/me/tmp/galaxy/install.ls5.log</action> <!-- download the kalign submodule --> <action type="download_file">https://github.com/makrutenko/kalign-dunovo/archive/v0.2.0.tar.gz</action> <action type="shell_command">tar -zxvpf v0.2.0.tar.gz</action> @@ -47,12 +49,12 @@ <!-- make and install --> <action type="shell_command">make clean</action> <action type="shell_command">make</action> - <action type="shell_command">ls -lFhAb > /home/me/tmp/galaxy/install.ls5.log</action> + <action type="shell_command">ls -lFhAb > /home/me/tmp/galaxy/install.ls6.log</action> <action type="move_directory_files"> <source_directory>.</source_directory> <destination_directory>$INSTALL_DIR</destination_directory> </action> - <action type="shell_command">ls -lFhAb $INSTALL_DIR > /home/me/tmp/galaxy/install.ls6.log</action> + <action type="shell_command">ls -lFhAb $INSTALL_DIR > /home/me/tmp/galaxy/install.ls7.log</action> <action type="set_environment"> <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR</environment_variable> </action>