Mercurial > repos > nick > dunovo
changeset 27:06e47132b979 draft
planemo upload for repository https://github.com/galaxyproject/dunovo commit b'2b77ee91bdd1d7ba56c4dfe4e98639d2759e61d1\n'-dirty
author | nick |
---|---|
date | Fri, 05 Jan 2018 05:25:00 -0500 |
parents | db602e459536 |
children | 0c3e8fa84c38 |
files | align_families.xml correct_barcodes.xml dunovo.xml make_families.xml tool_dependencies.xml |
diffstat | 5 files changed, 13 insertions(+), 13 deletions(-) [+] |
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--- a/align_families.xml Fri Jan 05 04:54:42 2018 -0500 +++ b/align_families.xml Fri Jan 05 05:25:00 2018 -0500 @@ -1,9 +1,9 @@ <?xml version="1.0"?> -<tool id="align_families" name="Du Novo: Align families" version="2.0.11"> +<tool id="align_families" name="Du Novo: Align families" version="2.0.12"> <description>of duplex sequencing reads</description> <requirements> <requirement type="package" version="7.221">mafft</requirement> - <requirement type="package" version="2.0.11">dunovo</requirement> + <requirement type="package" version="2.0.12">dunovo</requirement> <!-- TODO: require Python 2.7 --> </requirements> <version_command>align-families.py --version</version_command>
--- a/correct_barcodes.xml Fri Jan 05 04:54:42 2018 -0500 +++ b/correct_barcodes.xml Fri Jan 05 05:25:00 2018 -0500 @@ -1,10 +1,10 @@ <?xml version="1.0"?> -<tool id="correct_barcodes" name="Du Novo: Correct barcodes" version="2.0.11"> +<tool id="correct_barcodes" name="Du Novo: Correct barcodes" version="2.0.12"> <description>of duplex sequencing reads</description> <requirements> <requirement type="package" version="1.1.2">bowtie</requirement> <requirement type="package" version="1.10">networkx</requirement> - <requirement type="package" version="2.0.11">dunovo</requirement> + <requirement type="package" version="2.0.12">dunovo</requirement> <!-- TODO: require Python 2.7 --> </requirements> <version_command>correct.py --version</version_command>
--- a/dunovo.xml Fri Jan 05 04:54:42 2018 -0500 +++ b/dunovo.xml Fri Jan 05 05:25:00 2018 -0500 @@ -1,8 +1,8 @@ <?xml version="1.0"?> -<tool id="dunovo" name="Du Novo: Make consensus reads" version="2.0.11"> +<tool id="dunovo" name="Du Novo: Make consensus reads" version="2.0.12"> <description>from duplex sequencing alignments</description> <requirements> - <requirement type="package" version="2.0.11">dunovo</requirement> + <requirement type="package" version="2.0.12">dunovo</requirement> <!-- TODO: require Python 2.7 --> </requirements> <version_command>make-consensi.py --version</version_command>
--- a/make_families.xml Fri Jan 05 04:54:42 2018 -0500 +++ b/make_families.xml Fri Jan 05 05:25:00 2018 -0500 @@ -1,8 +1,8 @@ <?xml version="1.0"?> -<tool id="make_families" name="Du Novo: Make families" version="2.0.11"> +<tool id="make_families" name="Du Novo: Make families" version="2.0.12"> <description>of duplex sequencing reads</description> <requirements> - <requirement type="package" version="2.0.11">dunovo</requirement> + <requirement type="package" version="2.0.12">dunovo</requirement> </requirements> <!-- TODO: Add dependency on coreutils to get paste? --> <version_command>make-consensi.py --version</version_command>
--- a/tool_dependencies.xml Fri Jan 05 04:54:42 2018 -0500 +++ b/tool_dependencies.xml Fri Jan 05 05:25:00 2018 -0500 @@ -9,11 +9,11 @@ <package name="networkx" version="1.10"> <repository changeset_revision="3469a6858fd4" name="package_networkx_1_10" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" /> </package> - <package name="dunovo" version="2.0.11"> + <package name="dunovo" version="2.0.12"> <install version="1.0"> <actions> <!-- download the main dunovo package files --> - <action sha256sum="45d67ec4559880aacc228cb1a8be40dc4821ecf41699ea76efd62222a5e4deab" type="download_by_url">https://github.com/galaxyproject/dunovo/archive/v2.0.11.tar.gz</action> + <action sha256sum="6973f163dabf82d236982534d88b5d11573a5aa0982bf9d6236be635fb9b4e11" type="download_by_url">https://github.com/galaxyproject/dunovo/archive/v2.0.12.tar.gz</action> <!-- TODO: Store dunovo version number in variable instead of hardcoding it everywhere. --> <action type="shell_command">rmdir kalign utillib ET</action> <!-- download the utillib submodule --> @@ -22,7 +22,7 @@ <action type="shell_command">rm v0.1.0.tar.gz</action> <action rename_to="utillib" type="move_file"> <source>utillib-0.1.0</source> - <destination>$TMP_WORK_DIR/dunovo-2.0.11</destination> + <destination>$TMP_WORK_DIR/dunovo-2.0.12</destination> </action> <!-- download the kalign submodule --> <action type="download_file">https://github.com/makrutenko/kalign-dunovo/archive/v0.2.0.tar.gz</action> @@ -30,7 +30,7 @@ <action type="shell_command">rm v0.2.0.tar.gz</action> <action rename_to="kalign" type="move_file"> <source>kalign-dunovo-0.2.0</source> - <destination>$TMP_WORK_DIR/dunovo-2.0.11</destination> + <destination>$TMP_WORK_DIR/dunovo-2.0.12</destination> </action> <!-- download the ET submodule --> <action type="download_file">https://github.com/NickSto/ET/archive/v0.2.2.tar.gz</action> @@ -38,7 +38,7 @@ <action type="shell_command">rm v0.2.2.tar.gz</action> <action rename_to="ET" type="move_file"> <source>ET-0.2.2</source> - <destination>$TMP_WORK_DIR/dunovo-2.0.11</destination> + <destination>$TMP_WORK_DIR/dunovo-2.0.12</destination> </action> <!-- make and install --> <action type="shell_command">make clean</action>